Emticicia oligotrophica: Emtol_4059
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Entry
Emtol_4059 CDS
T02272
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
eol
Emticicia oligotrophica
Pathway
eol03030
DNA replication
eol03430
Mismatch repair
eol03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
eol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Emtol_4059
03430 Mismatch repair
Emtol_4059
03440 Homologous recombination
Emtol_4059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eol03032
]
Emtol_4059
03400 DNA repair and recombination proteins [BR:
eol03400
]
Emtol_4059
Enzymes [BR:
eol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Emtol_4059
DNA replication proteins [BR:
eol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Emtol_4059
DNA repair and recombination proteins [BR:
eol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Emtol_4059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
DUF7398
LysM1_NFP_LYK
Motif
Other DBs
NCBI-ProteinID:
AFK05184
LinkDB
All DBs
Position
4489125..4492706
Genome browser
AA seq
1193 aa
AA seq
DB search
MQFSHLHNHTQFSLLDGASDIKKLFKKAQADNMPAMAITDHGNMFGVFEFVATAGKFGVK
PIVGCEFYVVEDHTRKQFTKEQKDKRYHQLLLAKNAQGYKNLVKLCSLGYIDGLYGKYPR
ITKALIEQYKEGLIATTCCIGAMVPQTILKKGEEEAEKEFQWWLDRFGEDYYVEVQRHDI
PEQIKANEVLVKFAKKYGVKVIASNDSHYVDQQDWVAHDILLCVNTNEKLSTPSAKEFND
EEGAPKDTRFAFYNDQFYFKTTQEMSTLFSDMPEAIDNTNEIVSKVETLKLKRDIMLPNF
PIPNEFKIHEDDTLNQWEYLKHLTYEGARQRYSEIGTEVQERLDFELFTIKSMGFAGYFL
IVSDFIKAGRDMGVMIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLNPDRKSMPDI
DTDFDDEGRQRVIDYVVQKYTKNQVAQIITYGTMATKSSIKDVARVMELPLADANYIVKL
VPDKPAYGIDFEKMVNWPLEGKGSLADLGVQPDEIENVKRFRSMYNGNDLTAKVLQQAHK
LEGTVRNTGIHAAGVIIAPEDLYNILPVSTSKDTDLLITQYEGKIIEDAGVIKMDFLGLR
NLTIIKDCLRMIKENHGVEIDIDNIPLDDKLTYELFQRGETNAVFQFESDGMKKYMKELK
PDRLDDLIAMNALYRPGPIAYIPNFINRKHGREEVKYDLADMEEFLGETYGITVYQEQVM
LLSQKLAGFSKGDADVLRKAMGKKDRATLDKLKPKFMEGAMSRGHDGKILEKVWTDWEAF
ASYAFNKSHSTCYAFVAYQTAYLKAHYTSEYMAAVMTSQLGNIDKITFFMEECKALGLRV
LGPDVNESQKQFSVNKNGEIRFGMGGIKGSGDAAVDAIIEERNKNGHFTDIFDFITRVNL
RTVNKKTLESFAYAGAFDCFSDLHRAQFFAETDGTILIEKIIRYANKYHENANAGQNSLF
GSVGGAFDIAKPKIPDCERWGDIQKLKFEKEVVGFYISGHPLDEFDLEMRRCVPLDQVFD
PLNANKEFAIGGVVTSVMHKTSKNGNPFGIMKIEDYGSSMEMMFFGQDYVNFSKYMQIGL
FLFIRGKIQTKWGREGDFEFKPISMELLSEIRNKLFKEVKISLGLQFVNAQLIEQIQNMT
ARYPGNFDFKMSVYDSEEKMDVMLLSRKQKVASTNDFVKELKELVGEENVVLG
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttctcacttacataatcatacacaattttcattgctagatggtgcttctgac
attaagaagttattcaaaaaagctcaagctgataatatgcctgctatggccatcacagac
catgggaatatgtttggtgtatttgagtttgtagcaactgctggaaaatttggagttaaa
cccatagtgggttgtgaattttatgtggttgaagatcacacaagaaagcagtttactaaa
gaacaaaaagataagcgttatcaccagcttttattggctaaaaatgctcaaggatataag
aatttggttaaactttgttctttaggatatatagatggattatatggaaaatatccacga
attacaaaagctttaattgaacaatacaaagaaggtttaattgccacaacctgctgtatt
ggagcaatggttccgcaaacaattttaaaaaaaggcgaggaagaggccgaaaaagagttc
caatggtggctagatagatttggcgaggattattacgtggaagtacaacgccacgatatt
ccagaacaaatcaaagctaatgaggtattggtgaagtttgccaagaaatatggtgtgaaa
gtcattgcctcaaatgatagtcattatgttgaccagcaagattgggtagcacatgatatt
ttattgtgtgtaaataccaatgaaaaattatcgactccttctgccaaagaattcaatgat
gaagaaggtgctcccaaagatacacgatttgcattttataacgaccaattttacttcaag
actacccaagaaatgagtacgttgtttagcgatatgccggaggcaatcgataataccaac
gaaattgtttcaaaagtagaaactttaaagttgaagcgtgatattatgcttcccaatttc
cctattcccaatgagtttaaaattcatgaagatgataccctcaatcaatgggaatatttg
aagcatttaacttatgaaggagctcgccaaagatacagcgaaatcggaactgaagtgcaa
gaacgccttgattttgagttgtttaccatcaaatcaatgggttttgcaggttacttttta
attgtatccgactttattaaggctggccgtgacatgggcgtaatgattggacccggtcgt
ggttcggctgctggttcggcagtagcttattgtatcggcattacaaacattgaccccatc
aagtataatttactttttgagcgtttcttgaatccagacagaaagtcaatgcctgatatt
gataccgattttgatgatgaaggtcgtcaaagagtaattgattatgtggttcagaaatat
accaaaaatcaggtagcacaaatcattacttatggtacaatggccacaaaatcttctatc
aaagatgtggctcgtgtgatggaattgcctttagctgatgccaattacatcgtaaaattg
gttccagacaaacccgcttatggaattgattttgaaaaaatggttaattggccgcttgaa
ggaaaaggtagtttggctgatttgggtgttcaacccgatgaaattgaaaacgttaagcgt
tttcgttctatgtataatggtaatgatctcacagctaaagtacttcaacaggcacataag
ttagagggaactgttcgtaacacaggtattcatgcagcgggtgtaattattgcccctgaa
gatttatacaatattttgcctgtatctacttcaaaagataccgatttattgattacacaa
tatgaaggaaagattattgaagatgcaggtgtaattaaaatggactttttgggtcttcgc
aaccttacaattatcaaagattgtttacgcatgattaaagaaaatcatggagtagaaatt
gatattgataatattccactagatgataagctaacctacgaacttttccaaagaggcgaa
accaacgccgtatttcagtttgaatctgatggtatgaaaaaatacatgaaagaactgaaa
cccgaccgtttggatgacctcattgccatgaatgcattgtatcgtccggggccaattgca
tatatcccaaactttattaatcgtaagcatggtagagaggaagtaaaatacgatttggct
gacatggaggaattcttgggggaaacttacggaattacggtttaccaagaacaggtaatg
cttctttcccaaaaattggctggattttctaaaggtgatgccgatgttttgcgaaaagca
atgggaaaaaaagaccgtgcgacactcgataagctgaaacctaaatttatggaaggggca
atgtcgagaggacatgatgggaaaattcttgaaaaagtttggaccgactgggaggccttc
gcttcttacgcatttaataaatcgcactctacttgttatgcttttgtggcttatcaaacc
gcctatttaaaagcacattatacatccgagtacatggctgctgtgatgacttcgcagttg
ggaaatattgataaaattacatttttcatggaagaatgtaaagctctaggtttgagagtt
ttggggccagatgtcaatgaatctcaaaagcagtttagtgttaacaaaaacggcgaaatt
cgttttggtatgggaggaatcaaaggttcgggagatgccgctgttgatgctatcattgag
gaaagaaacaaaaatggacattttactgatattttcgatttcatcaccagagtaaacctt
cgcacggttaacaaaaaaacactcgaatcattcgcgtatgcaggagcatttgattgtttt
tctgatttgcaccgtgctcaattttttgccgagactgatggtactatactgattgaaaag
ataattagatatgccaataaatatcatgaaaatgccaatgctggtcaaaattctttattt
ggctctgttggaggagcatttgatattgccaaaccgaaaattcctgattgtgagcgttgg
ggtgatattcagaaactaaaattcgaaaaagaagtagttggtttttacatttctggtcac
ccacttgacgagtttgacctcgaaatgagaagatgtgtgccacttgaccaagtatttgac
ccactaaatgccaataaagaatttgccattggtggtgttgtgacgagtgtgatgcataaa
acatcaaaaaatggcaatccgtttggaatcatgaaaattgaagattatggttcgagtatg
gaaatgatgtttttcggacaagattatgtgaatttctcaaaatatatgcaaatagggctt
ttcttatttattcggggaaaaattcaaacaaaatgggggagagaaggtgattttgaattt
aaaccaattagtatggagttattgagcgaaatcagaaacaaactttttaaagaagtaaaa
atttctttaggtttacagtttgtaaatgctcagttaattgaacaaatacaaaatatgacg
gctcgctatccaggaaattttgattttaaaatgtcggtttatgattcagaagaaaaaatg
gatgtcatgttactctcccgcaagcaaaaagtagcttcaaccaacgattttgtgaaagaa
ttgaaagagttggtcggtgaagaaaatgttgttttagggtaa
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