Emticicia oligotrophica: Emtol_4188
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Entry
Emtol_4188 CDS
T02272
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
eol
Emticicia oligotrophica
Pathway
eol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Emtol_4188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eol03019
]
Emtol_4188
03016 Transfer RNA biogenesis [BR:
eol03016
]
Emtol_4188
Enzymes [BR:
eol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Emtol_4188
Messenger RNA biogenesis [BR:
eol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Emtol_4188
Transfer RNA biogenesis [BR:
eol03016
]
Prokaryotic type
tRNA degradation factors
Emtol_4188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
RNase_II_C_S1
S1_2
KH_2
Motif
Other DBs
NCBI-ProteinID:
AFK05312
LinkDB
All DBs
Position
4648866..4651001
Genome browser
AA seq
711 aa
AA seq
DB search
MFNIHTKTIVMPDGKVITIETGKLARQADGSVVVKSGNTMLLATVVAAQEHKEGTDFLPL
SVDYQEKFGSAGKIPGSFQRREGKLSDNEVLISRLIDRALRPIFPEDYHAEVQVIVTLIS
ADAEIQPDALAALAASAALAVSDIPFNGPISEVRVIKSNGQYLVNPTTSEMKHASLDLIV
AGTRDNIIMVEGEADQCTEEEMIEAIKVAHEAIIVQVDALKAFETELGKTEKRVYCHEVH
DEELRERMNKELYDKVYAVCLEGNNKKEVRKEKFGAILDEFIASLSEEELAEKKSLIKTY
YGDIQYYASRNMVLDERTRLDGRKLDEIRPIVCEVDYLPSAHGSALFTRGETQSLTTATL
GTKLDEMIVDQVMVSGYSKFFLHYNFPGFSTGEIKPNRGAGRREIGHGNLAMRSLKQILP
PEADNPYTIRVVSDILESNGSSSMATVCAGCLALMDAGVQIKAPISGIAMGLITDNSAGK
WAVLSDILGDEDHLGDMDFKVTGTETGITACQMDIKIGGLSFEILEQALLQAKAGRIHIL
GKMKEAIETPRPDLKPHAPRAFTIVIDKEFIGAVIGPGGKIVQEIQRESGATITIEEKEG
KGYVSIFATNGDSMAHAKKRVYAIVATPEVGEVYDAKVKSIQPFGAFVEFMPGKEGLLHI
SEISWERLPSMDGVLEIGEELQVKLLEVDPKTGKFRLSRKALLPRPEKKQA
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacattcacactaagaccatcgtaatgcccgatggcaaagtgattaccattgaa
actgggaaattggctcgtcaggctgatggttcggtagtagttaaaagtggtaatacaatg
cttttggctactgtagttgcggcacaagaacacaaagaaggaaccgacttcttacctctt
tcggttgattatcaagaaaaatttggttctgcaggtaaaattccgggaagtttccaacgt
cgtgagggaaaactttcagataatgaagtgcttatcagtcgtttgattgaccgtgcttta
cgtccaatttttcccgaggactatcatgcagaagttcaagttattgttacattaatttct
gcggatgcggaaattcaacctgatgccctcgctgctttagctgcttctgctgcattggct
gtttctgatattccatttaatggaccaatctctgaagttcgtgtgataaaatcaaatggt
cagtatttagtcaacccaactacaagcgaaatgaagcacgcttcattagatttaattgta
gctggaacacgtgataatatcattatggttgagggagaggcagaccaatgtactgaagaa
gaaatgattgaagcaattaaggttgctcatgaagctattatcgttcaggtagatgcattg
aaagcctttgaaactgaattaggcaaaactgaaaaacgtgtttattgtcatgaagttcat
gatgaagaactacgtgaacggatgaataaagagctttacgataaagtttatgctgtttgt
ttggaaggaaataacaagaaagaagttagaaaagagaaatttggagctatacttgatgag
tttattgctagcttatcagaggaagagttagctgagaaaaaatctcttatcaaaacatat
tatggtgatattcagtactatgcatcaagaaacatggtacttgatgaacgtacacgttta
gacggtcgtaagttagatgaaattcgtccaattgtttgtgaagtagattatctaccatct
gctcatggttcggcactatttactcgtggcgaaacacaatcattaacaacagcaactttg
ggtacaaagcttgatgaaatgattgttgaccaagtaatggtttctggatatagcaagttt
ttcttgcattataatttcccaggattctctacgggcgaaatcaaaccaaaccgtggtgca
ggtcgtcgtgaaattggtcatggtaacttggcgatgcgttctttgaaacaaatattgcca
ccagaagctgataatccttatacaattcgtgtagtatctgatattcttgaatcgaatggt
tcatcttcaatggctacagtttgtgctggatgtttggctttgatggatgctggtgtacaa
attaaagcaccaatctctggcattgcaatgggtttaattactgataactcagcagggaaa
tgggctgtactttctgatatccttggtgatgaagaccaccttggtgatatggacttcaaa
gtaacgggtactgaaactggtatcactgcttgtcagatggacattaaaatcggagggtta
tcttttgaaattcttgagcaagcattacttcaggcaaaagcaggcagaattcatatctta
ggaaaaatgaaggaagcaattgaaactcctcgtccagatttgaaaccacacgctccacgt
gcattcaccattgttatagataaagaattcattggtgcagtaatcggacctggtggtaaa
attgtacaggaaatccaaagagaatcaggagctactattacaattgaagaaaaagaaggt
aaaggatatgtttctatttttgcaaccaatggcgatagtatggcacatgctaaaaagcgt
gtgtatgcaattgtagctactccagaggtaggtgaagtatatgatgcaaaagtaaaatcg
attcaaccattcggtgcttttgttgaatttatgcctggtaaagaaggtttacttcatatt
tctgaaatttcatgggaacgccttccaagtatggatggtgtacttgaaatcggtgaagag
cttcaggttaaattactcgaagttgacccaaaaactggtaaattccgattatcaagaaaa
gcacttttaccaagaccagaaaagaaacaagcataa
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