Endosymbiont of Pachyrhynchus infernalis: NARPIN1_01570
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Entry
NARPIN1_01570 CDS
T07678
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eop
Endosymbiont of Pachyrhynchus infernalis
Pathway
eop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NARPIN1_01570 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eop03019
]
NARPIN1_01570 (rne)
03009 Ribosome biogenesis [BR:
eop03009
]
NARPIN1_01570 (rne)
Enzymes [BR:
eop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NARPIN1_01570 (rne)
Messenger RNA biogenesis [BR:
eop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NARPIN1_01570 (rne)
Ribosome biogenesis [BR:
eop03009
]
Prokaryotic type
rRNA processing factors
NARPIN1_01570 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BBA84887
LinkDB
All DBs
Position
complement(142911..144602)
Genome browser
AA seq
563 aa
AA seq
DB search
MKRILISTKQKDELIIAFINKKELYNIYIENINYSQNKFNIYKSKIIKIEPSLNAVFINY
GYKKNGFLPIKEISNNFFLNNGYKNDNQNYYEKIKNLKKDQEILVQINKESRRNKCASFT
TFISLIGTYIILIVNNPNIKGISKKIIGKNRFILKKMISNLNISKNIGFIIRTSCIGKKI
EDIQLDLNLILKNWEFIKEKYIKSKCPSLIYENNNIFIKIFRDYLTPDIKEIIIDDINFF
NKSKEYINILGRFEFNNKIKIYDKNISIFNYFKIESQIESIFKRKIKLSSGGSISIDSTE
ALTAIDINSYKSTKFTNIKETAFKTNLEAIKEIAKQLRFRDISGLIVIDFIDMFSKENNL
EIENEFRKYLYLDKSKICMENISKFGLLELSRQRLNKSLNECNNICTKCNGIGFIRNYES
LSLSILRFLEKKSLNKNIEEICIIVPLFIRIYLLKNKKKEIYNIKNINNKNIKLIILSNN
NIRISNNFIIKIKYKNKNYINYICSKINKFNILNFNNIKNKLKNLFKLKLLGVYNINYIN
KKILYKNILLILIYYINKLIITY
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatattaataagcactaaacaaaaagatgaattaataatagcatttataaat
aaaaaagaattatataatatatatatagaaaatataaattatagtcaaaataaatttaat
atttataaaagtaaaattataaaaatagaacctagtttaaatgcagtatttataaattat
ggatataaaaaaaatggatttctacctattaaagaaatatcaaataacttttttttaaat
aatggttataaaaatgataatcaaaattattatgaaaaaataaaaaatttaaaaaaagat
caagaaatattagttcaaataaacaaagaatcaagaagaaataaatgtgcgtcatttaca
acatttatatctttaataggaacatatattatattaatagtaaataatcctaatataaaa
ggaatatcaaaaaaaataataggtaaaaatagatttattttaaaaaaaatgatttcaaac
ttaaatatatctaaaaatataggttttataataagaacatcttgtataggtaaaaaaata
gaagatatacaattagatttaaatttaattttaaaaaattgggagtttattaaagaaaaa
tatattaaatctaaatgtccatcattaatatatgaaaataataatatatttataaaaata
tttagagattatttaacaccagatataaaagaaataataatagatgatattaattttttt
aataaatctaaagaatatataaatattttaggaagatttgaatttaataataaaataaaa
atatatgataaaaatatatctatatttaattattttaaaatagaatctcaaattgaatct
atatttaaaagaaagataaaattatcatctggaggatctatatcaatagattcaactgaa
gcattaacagctattgatataaattcatataaatctacaaaatttacaaatataaaagaa
acagcatttaaaactaacttagaagctattaaagaaatagctaaacaattaagatttaga
gatataagcggtcttatagtaatagattttatagatatgttttcaaaagaaaataattta
gaaatagaaaatgaatttcgtaaatatttatatttagataaatcaaaaatttgtatggaa
aatatatctaaatttggattattagaattatcacgacaaagattaaataaatctttaaat
gaatgcaataatatatgtactaaatgtaatggaattggatttataagaaattatgaatca
ttatcattatctattttaagatttttggaaaagaaatctttaaataaaaatattgaagaa
atatgtattatagttccattatttattagaatatatttattaaaaaataaaaaaaaagaa
atatataatataaaaaatattaataataaaaatataaaattaattattttatcaaataat
aatattagaatatctaataattttataataaaaataaaatataaaaataaaaattatata
aattatatatgttcaaaaattaataaatttaatattttaaactttaacaatataaaaaat
aaattaaaaaatttatttaaattaaagttattaggtgtttataatattaattatataaat
aaaaaaattttatataaaaatatattacttatattaatttattatataaataaactaata
attacatattaa
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