Endosymbiont of Rhynchophorus ferrugineus: NARRFE1_00300
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Entry
NARRFE1_00300 CDS
T07618
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eor
Endosymbiont of Rhynchophorus ferrugineus
Pathway
eor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NARRFE1_00300 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eor03019
]
NARRFE1_00300 (deaD)
03009 Ribosome biogenesis [BR:
eor03009
]
NARRFE1_00300 (deaD)
Enzymes [BR:
eor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NARRFE1_00300 (deaD)
Messenger RNA biogenesis [BR:
eor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NARRFE1_00300 (deaD)
Ribosome biogenesis [BR:
eor03009
]
Prokaryotic type
rRNA helicases
NARRFE1_00300 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
T2SSE
Cas3-like_C_2
Branch_AA_trans
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBA84990
UniProt:
A0A2Z5T3M0
LinkDB
All DBs
Position
complement(31405..32745)
Genome browser
AA seq
446 aa
AA seq
DB search
MKNNNNLSFNDLGINNKFLIDKINNLNYKPFPVQIKCIPEILNNINIVGIANTGSGKTLS
FVLPILEILYNKNINIIILEPTRELSLQVEKVFKIFINDINKIKIANLYGGVGYTNQLEI
LKKNPQIIIGTPGRIIDHIKKKNLNINNISIVVIDESDEMLKMGFINDIKFILSNIKNKY
QIILFSATMPNYIYTNIIDKIIKKYKKITVENKFDIKPNIKQEYCIINNDNNKNLILTKM
IEINKNLGSIIIFVNRKISTIELSNYLKNLGYNTSYLNGDLIQKIRERTIELFKKSKIDI
LVATDIASRGIDIDNINLVINYDSPNNLETYIHRIGRTGRAGRSGKSIIFIKNIKFLKII
NKKFNNINKINYPNNKIMIEIIFNKITDDIKNQYLKLEYEKNINYYNNIIKKLLCFTDNN
INKLSIILFKLIQNNNKLYNLFINKN
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataataataatttatcttttaatgatttaggaataaataataaatttttaatt
gataaaataaataatttaaactataaaccatttccagtacaaataaaatgtataccagaa
atattaaataatataaatatagttggaatagcaaataccggtagtggaaaaactttatct
tttgttttacctatacttgaaattttatataataaaaatataaatataattatattagaa
ccaactagagaattatctttacaagttgaaaaagtttttaaaatatttattaatgatata
aataaaattaaaatagctaatttatatggtggagttggatatacaaatcaattagaaata
ttaaaaaaaaatcctcaaataataattggtactccaggaagaataatagatcacataaaa
aaaaaaaatttaaatataaataatatatctattgttgttatagatgaatctgatgaaatg
ttaaaaatgggttttataaatgatataaaatttatattaagtaatataaaaaataaatat
caaataatattattttcagctacaatgcctaactatatatatactaatataatagataaa
ataataaaaaaatataaaaaaataactgtagaaaataaatttgatataaaacctaatata
aaacaagaatattgtataataaataatgataataataagaatttaatacttacaaaaatg
atagaaataaataaaaatttaggatctataataatatttgtaaatagaaaaatatctaca
atagaattgtctaattatttaaaaaatttaggttataatactagttatttaaatggagat
ttaatacaaaaaataagagaaagaactatagaattatttaaaaaatcaaaaattgatata
ttagtagctacagatatagcatcaagaggtatagatatagataatattaatttagttata
aactatgattcaccaaataatttagaaacatatatacatagaataggaagaactggtaga
gcaggaagatctggaaaatcaataatttttataaaaaatataaaatttttaaaaataatt
aataaaaaattcaataatataaataaaataaattatcctaataataaaataatgatagaa
ataatatttaataaaattacagatgatataaaaaatcaatatttaaaattagaatatgaa
aaaaatataaattattataataatattataaaaaaattattatgttttactgataataat
ataaataaattatctataatattatttaaattaatacaaaataataataaattatataat
ttatttattaataaaaattag
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