Exaiptasia diaphana (Aiptasia): 110233742
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Entry
110233742 CDS
T05080
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
epa
Exaiptasia diaphana (Aiptasia)
Pathway
epa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
epa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110233742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
epa03019
]
110233742
03041 Spliceosome [BR:
epa03041
]
110233742
03009 Ribosome biogenesis [BR:
epa03009
]
110233742
03016 Transfer RNA biogenesis [BR:
epa03016
]
110233742
Enzymes [BR:
epa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110233742
Messenger RNA biogenesis [BR:
epa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110233742
Spliceosome [BR:
epa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110233742
Complex C
U4/U6.U5 tri-SnRNP related factors
110233742
Ribosome biogenesis [BR:
epa03009
]
Eukaryotic type
Pre-60S particles
Helicases
110233742
Transfer RNA biogenesis [BR:
epa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110233742
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
110233742
NCBI-ProteinID:
XP_020894721
UniProt:
A0A913WVI8
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
EYPFILDPFQKEALKCLZNNQSVLVSAHTSAGKTVVAEYAIAMSLKNKQRVIYTTPIKAL
SNQKYRELYEEFQDVGLMTGDVTINPSASALVMTTEILRSMLYRGSEVMREVAWVVFDEI
HYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWITHLHKQPCHVVYTDFRPT
PLQHYVYPSGGDGLFLVVDEKGDFREENFNKAIAVIRDGGTDPGSLKGRKGGTKGPSNTF
KIVKMIMERNFQPVIIFSFSKKECEAYALQMSKLDFNTTQEKGLVEEVFNNAIDCLSDDD
KKLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFAEGLIKALFATETFALGLNMPART
VVFSSSRKFDGKDFRFITSGEYIQMSGRAGRRGLDERGIVILIVDEKMGPDVGKSLLKGH
ADPLNSAFHLTYNMVLNLLRVEEINPEIMLEKSFYQFQNYSAIPDMIEKIKKLEKQRDEF
EIPNEESITAYYKIRQQLKKLGDDMLAFIHQPKYCLPFMQPGRLVKIQNRDVDFGWGVVL
NFQKKANQKSGGPISDAIYVLEVLVKCSSKRIRSADGEMPQPCGPDEKGEMQVVPVLLHL
VKRLSSVRLYIPKDLRSPDSRQSVGKSIQEVSKRFPDGLPLLDPIEDMGIKDDGLKKIIR
KIEMLEHRMYSHPLHKDASLDSLYKLCEEKAQIIDKAKTARKELKKARTILQLDELKCRK
RVLRRLGYSTAADVIELKGRVACELSSGDELLLTEMIFNGVFNDLTTEQSVALLSCFICE
ERSDELPKLKEELAGPLRQMQESARRIAKVSQEAKMDLDIEDYVESFRPHIMDVVFAWRM
ALLSLIFVK
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
gaatatccatttatcctggatccctttcaaaaagaagcwctcaagtgtctasaaaacaat
caatcagtgcttgtgtctgctcatacatcagcaggaaagacagttgttgcagaatatgct
attgcaatgtccttaaagaacaaacaaagagtaatctacacaacgcctatcaaggctctt
agcaaccaaaagtaycgtgaattatatgaagagttccaagatgttggtctgatgacaggt
gaygtgaccatcaacccatcwgctagtgcacttgtcatgactactgagattcttaggagt
atgctgtatagaggctcagaggtcatgagggaggtggcctgggttgtttttgatgaaatc
cattacatgagagataaagagcgtggtgttgtgtgggaagagaccatcatccttctccct
gataatgtccactacgtgttcctgtctgccactattcccaatgcacggcagtttgcagag
tggataacgcatctccataagcagccgtgccacgttgtgtacactgatttccgtcctaca
ccacttcaacattatgtctatccttctggaggagatggtttgttccttgttgttgatgaa
aagggtgattttcgtgaggagaatttcaacaaagccattgcagttataagagatggagga
acagatcctggttcattaaaaggacgcaaaggagggaccaaaggtccatcaaacacattc
aagattgtcaagatgattatggagagaaactttcagcctgttatcatcttcagcttcagc
aaaaaagagtgtgaagcttacgcactgcagatgtccaaactggacttcaacacaacgcaa
gagaaaggattggtagaagaagtgttcaacaatgccatagactgtttatccgacgatgac
aagaaactacctcaagttgaacatgttcttcccttactgaagagagggattggtatccac
cattctggacttctacccatcttgaaagagactatcgagattctatttgctgaaggactt
atcaaggcactgtttgctacagagacgtttgctttgggtctcaacatgccggcaagaacg
gttgtcttctcaagctcacgaaaattcgatggaaaagattttagatttataacatctggt
gaatacattcaaatgagtggacgagcagggcgaagaggtctggatgaaagaggcatcgtt
attctgattgtmgatgaaaaaatgggwccygatgttgggaaaagtctactcaagggccac
gcagatccgctgaacagtgctttccatcttacgtacaatatggtcctgaatctgcttcgt
gttgaggaaatcaaccctgaaataatgctggagaaatctttctatcaatttcaaaactat
tctgccatccctgacatgattgaaaaaatcaagaaacttgaaaaacagagagatgaattt
gaaatcccaaacgaggagtcgatcacagcgtactacaagatacgacaacagttgaagaaa
ctaggagacgacatgttggcgttcatccatcagccaaagtattgccttccgtttatgcaa
ccaggacgacttgtaaagattcaaaatagggacgtggactttggatggggtgtggtactc
aatttccagaaaaaagcaaaccaaaagagcggaggaccaataagtgatgcgatatatgtg
ttagaagttcttgtaaaatgttcaagtaaaaggattcggtctgcagatggtgagatgccg
cagccatgcggtcctgatgagaaaggggagatgcaggtcgtgcctgttttattacatctt
gttaaacggctcagcagtgtgagattatatattcctaaagatttgcgatcacctgatagc
agacaaagtgttggtaaatcgatacaggaggtttctaagcggtttcctgatggcttaccg
ttattagatcctattgaagatatgggaatcaaagatgatggcttgaaaaaaattataagg
aaaatagaaatgcttgaacatcgaatgtactcacatccacttcataaggacgcctctctc
gactcgctatataagctatgtgaagaaaaagcacagatcatcgacaaagcaaagaccgca
cgaaaagaacttaaaaaagccaggacgatattacaactggatgaactaaaatgtcgaaaa
agagtcttaagaaggctgggttattctactgcagctgatgttatcgagctaaaaggccgt
gtagcatgtgaactcagcagtggtgacgagcttttgttaactgaaatgatttttaacggt
gtgttcaacgacttgacaaccgaacaaagtgtcgccctcttgagctgttttatttgtgag
gaacggagcgacgagctacccaagttaaaagaagagctcgctggtccattgagacagatg
caggagtcagcccgccgcattgctaaagtctcccaagaagccaaaatggatttagatatc
gaggattacgtggagtccttccgacctcacatcatggatgtcgtgtttgcttggcgaatg
gctcttctttctctcatatttgtaaaatga
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