Exaiptasia diaphana (Aiptasia): 110238366
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Entry
110238366 CDS
T05080
Name
(RefSeq) collagen alpha-1(I) chain
Organism
epa
Exaiptasia diaphana (Aiptasia)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Endostatin
fn3
Collagen_trimer
CRLF2-like_D2
Ig_DSCAM-DSCAML_C
Motif
Other DBs
NCBI-GeneID:
110238366
NCBI-ProteinID:
XP_020899697
UniProt:
A0A913X7K4
LinkDB
All DBs
Position
Unknown
AA seq
1599 aa
AA seq
DB search
MSTSVPDVTTGDISTSAPGVTTGDISTGAASVTTGDMTPSAAGVTTGDMSTASPAVTTGD
LSSSALGVTTGDISTGAASVTTGVMTPSAAGVTTGDMSSVSPAVSTGNMTRASTFASIPP
TPSSITTEEKTIKTTIYTKDWSVTITLSVVLPDLKXIHENLSPSSELYRLLSKPILTNVE
KFASNFESFVYAKLISVSRRSGSAVATVELRFSSLKKNELIDLVEVLEDNRAIEELAVGS
SNITADKVPSAPIGVQVHSISPTVAKVLWEPIALNSRHXSLLGYKVYYRAANSKKWNTAS
CNCTNVSVKNLKPNVKYRIRVFALTTNGNGIPSPALEVITGQGIGAAATTVKPISTAPSC
AVTCPKGEKGDRGSIGLPGLPGQTVYLSSNNGTVHLVKGSKGEPGSCSTNCSSMLKIRGP
KGEPGKSIVGPPGKPGNPGPPGVSGQPGASGLPGTPGAPGLPATYINMTTGEVIRILQGQ
KGQQGFNGSKGETGFKGDKGITGSDGXKGEKGQDGRPGPQGKRGLIGLPGKSLPGPQGKP
GPVGIKGEKGDPGAPKGEKGSEGPPGSIGIKGDKGESVTGPPGPPGPPGDGSITNGHSTC
SCPPGPKGVTGLTGQSGRDGLKGESGEKGQKGEIGEPGIPAPISPPFPGPPGLKGVKGEP
GDPGYPGLRGEIGLQGPPGFKGESGQVGIKGTPGIPGTKGDRGNAGRIGFPGIKGSPGEP
GPVGPTGAAGKSGGKGEKGERGIKGATGTNGLKGEPGVPGIQGEQGVIGSAGEKGAKGDR
GLAGIKGEKGDEGIGIKGAQGSPGTSGTQGPRGRQGPPGPPGLVAFVKGAKGEIGLTGKP
GTPGEKGNEGDEGQKGSQGIKGEQGSKGEVGATGPRGKPGLVIPGPSGPQGPPGSKGSSG
EKGSTGEAGLKGPIGPPGLKGSKGEIGPVGPKGKSIQGXPGPPGPPGPPGLITEVLIPGQ
GQQKGGVSKGQKGNPGRPGFPGQPGTDGEPGEPGLXGPPGDLGPQGLEGPIGQKGRKGEI
GSPGKQGLQGIAGRPGQKGAVGPQGDRGLSGPPGIPGQSGPSGDKGTRGAVGPAGERGEK
GDKGESGQPGPAGAQGQKGTAGKQGPQGPVGLPGPQGPPGLDGEAGRKGEKGNQGFGVKG
IKGEKGSMGPRGANGFPGRKGAKGDFGQSGLPGPAGEPGVSGLPGSVGPPGRKGERGDTG
PIGIRGEKGEVGSPGVPGKDGLVGIPGQTGVKGEAGDRGNDGANGAKGDKGTKGQDGQPG
VKGSPGDVTTVVGPPGPPGPPGLSTIKNENGTIIRGPPGPPGPKSLIPGPPGPPGPPGSP
GPPGDSKRSVGKTPVDIPGMKTMEHGVVTFDSLNNMIQSAPAVFAGTIAFVLSEQRLYVK
TSTGWRLVLVGPLVIGQTPTDQIYVTQEPSNGMLILPQPGIRLTGRYLRLIALNYPITGQ
MGTLAGIDGQCWKQSRKAGFIGGFRAFLSNTLQHIYTVVPRGERDLPVANLKGEQIFSSW
RKLFAKHLAFNPKTPIYSFDGEDVNKSKRWSTKYFWHGSKNDGRKAEENCGSWQSRSGKD
LSTASALDGSSAILDEQYYTCDNRFAVLCIQTSHNTFRK
NT seq
4800 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctcagtaccagatgttaccacaggagatataagcacctcagcaccaggcgtt
acaacaggagatataagcactggtgcagcatccgttactacaggggatatgactccctca
gcagcaggtgttacaacaggagatatgagtactgcttcaccagctgttaccacaggagat
ttgagttcctcagcactaggcgttactacaggagatataagcactggtgcagcatccgtt
actacaggggttatgactccctcagcagcaggtgttaccacaggagatatgagtagtgtt
tcaccagctgttagtaccgggaatatgactagagcatccacctttgcatctattcctcct
actccttcatcgattactacagaagaaaagacaattaagacaactatatatacgaaagat
tggtcagtcactatcacacttagcgttgtgcttcctgacttgaaargtattcacgaaaat
ctctcgccgtcaagtgaattgtatcgcttgctgtccaagcctattttgacaaatgttgag
aagtttgcctctaactttgaaagttttgtgtatgccaaactcatttccgtcagccgtaga
tctggtagtgctgttgcaacggttgagttacgcttttccagcttgaaaaagaacgaattg
attgacctcgtcgaagttttggaggacaatcgtgcgatcgaagagcttgccgtgggttca
tcaaacatcactgctgataaagttcccagtgctccaattggtgtacaagtacatagcatc
agtccgaccgttgctaaagttctatgggagcctatcgcactaaactcaagacatgratct
cttcttggttataaagtatattacagagccgctaactccaaaaaatggaacacagcctct
tgcaactgcaccaacgtgtctgtaaagaatctgaaaccaaacgtgaagtaccgcattcga
gtgttcgctttaacaaccaacggcaatggtattccaagtccagcattagaagtaataact
ggtcaaggtataggtgccgctgcgacgacagtcaaaccaatttcaactgctccttcatgt
gcagtaacttgtccaaaaggtgaaaaaggtgaccgtggaagcattggtctacctggtctt
cctggacaaaccgtttatttgtcttctaataatggcacagtacatctagtcaaaggatca
aagggtgagcctggatcttgctcgacgaactgctcatcaatgttgaaaattcgtggacct
aagggagagccaggaaaaagtatagtgggtccgccaggaaaaccaggaaatcctggccca
cctggcgtaagtggacaacctggggctagtggtcttccaggcactcctggtgcccctggc
cttcctgcaacgtatatcaacatgaccacaggcgaggtcataaggatccttcaaggacag
aagggacaacaaggttttaatggaagtaaaggagaaacaggttttaaaggtgacaaaggt
attactgggagtgatggacraaagggtgagaaaggtcaagatggtcgtcctggtcctcaa
ggaaaacgaggtcttattggtcttcctggaaagtcgttacctggtcctcaaggaaaacct
ggtccagttggaataaagggcgagaaaggtgatcctggcgctcccaaaggggaaaaggga
tctgaagggccccctggatccataggaatcaagggagataaaggrgagtcagtcactgga
ccacctggtcctccagggccaccgggtgatggcagtataacaaatggtcactctacatgt
tcgtgtccccccggacccaagggtgtcactgggcttactggacaatctggacgagatggt
ttgaaaggcgaaagtggtgaaaagggacagaaaggcgagattggtgaacctggtatccct
gcaccgatcagcccaccatttccaggtccaccaggtttaaaaggcgtyaaaggtgaaccc
ggtgatcccggctatccaggtcttagaggagagattggacttcaaggaccaccaggattt
aaaggagaatctggtcaagtaggaattaaaggaactcctggaatacctggtaccaaaggt
gatcgcggaaacgcaggacgaattggttttcctggaataaaaggwtcgcctggtgagcca
ggacctgtggggccaacaggagcagcaggaaaaagtggaggtaaaggagaaaagggcgag
agaggaattaaaggagctacaggtacaaacggactgaagggagaaccgggtgtacctgga
attcaaggggaacaaggtgtcattggttctgcaggggaaaagggtgcaaagggtgatcga
ggcttagctggaatcaaaggagaaaagggagatgaaggaatcgggatcaaaggagcgcaa
ggaagccctggtactagtggcacacagggacctcgaggacgacaagggcctccaggacct
cccggactcgtggccttcgttaagggcgcaaagggagagattggtctcacaggaaaacct
ggaacgcctggtgaaaagggtaacgagggtgatgaagggcagaagggtagtcagggtatt
aaaggcgagcaaggaagcaaaggagaggttggtgcgacaggaccacgtggcaaaccagga
ttggttattcctggaccatcgggaccgcaaggtccaccgggcagcaaaggmagcagtggc
gagaagggcagcactggtgaagcagggctcaaagggcccatcggtcctcctggtttaaag
ggaagcaaaggagaaattgggccagtcggaccaaagggtaaaagcatacaaggacytcct
ggacctccaggaccacccggaccacctggcttgattacggaagttcttattcctggtcaa
ggtcaacaaaagggaggcgttagtaagggacaaaaaggaaaccctggmagaccaggattt
ccaggacagcctggaacagatggtgagcctggagaacctggtcttwctggtccaccaggt
gatcttggacctcaagggcttgaaggaccgattggtcaaaaggggcggaaaggagaaatt
ggatcaccaggcaaacagggtcttcaaggtatagcagggcgaccaggacaaaaaggtgca
gtaggaccacaaggagatagaggactgtcaggtccacctggtattcctggccaatcagga
ccttcaggagacaagggaactcgtggcgctgttggtccagctggagaaagaggagagaag
ggcgataagggagaatctggrcaaccaggccctgcwggagctcaaggtcaaaaaggaacg
gcaggaaaacagggtcctcaaggacctgttgggctcccaggaccacagggtcctccagga
ctagatggtgaagctggacgtaaaggcgaaaagggtaaccaaggctttggagtcaagggc
atcaaaggcgaaaagggatcaatgggacctaggggtgcgaatggattccccggtagaaaa
ggagccaaaggagatttcggccaaagtggacttcctggacctgcaggtgaacctggagta
tctggactacctggtagtgtaggccccccaggacgcaaaggtgagcgaggtgatacagga
ccaatcgggatcagaggtgaaaaaggtgaagttggtagtccaggagttcctggaaaagat
ggtcttgttggaatacctggtcaaactggtgtcaagggtgaagctggtgatcgtggtaac
gatggggctaatggtgctaagggcgacaagggtacgaaaggtcaagatggacaaccagga
gtgaagggatctcctggagacgttacaacagttgtaggacctcctggtcctcccggacca
cccggcctgtccacgattaagaacgaaaatggtaccatcatacgtggtcccccgggccct
ccagggccaaaaagcttaataccaggaccacctggacctccaggaccaccggggtctcca
gggccccctggagactccaagagatctgttggaaaaacaccagttgatattcctggaatg
aagactatggaacatggggttgtaacctttgattccttaaataatatgatacaaagtgcg
ccagctgtctttgctggtacgattgcatttgttttatcggaacaacgtctttatgtwaag
accagcactggatggagactrgttttggttggtccgttagtgataggacagactcctact
gaccaaatatacgttacgcaggaaccatcaaatggaatgcttatattgcctcaaccagga
atcagattaacaggacgttatcttcgattgatagccctaaactaccctattaccggtcaa
atgggcactctagcgggtattgatggccaatgttggaaacagtctagaaaagctggcttc
attggaggattcagagcattcctctccaacacactgcaacatatatacacagtggtgcca
cgaggagagagagacttacccgttgctaatctcaaaggagagcaaatcttttcatcttgg
cgaaaactatttgcgaagcatttagcttttaaccccaaaacaccaatatattcctttgac
ggcgaagatgtcaataaaagcaaaagatggtcaacaaaatatttctggcatggstcaaag
aacgatggtcgcaaggccgaggagaattgtgggtcttggcaaagtcgaagtggmaaagac
cttagyacggcctctgcacttgatggaagctcggctatactcgatgaacaatattacact
tgtgacaatcgatttgctgtgctatgcatccaaaccagtcataacacatttaggaaatag
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integrated database retrieval system
