Exaiptasia diaphana (Aiptasia): 110244728
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Entry
110244728 CDS
T05080
Name
(RefSeq) collagen alpha-1(I) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
epa
Exaiptasia diaphana (Aiptasia)
Pathway
epa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
epa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110244728
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
epa00536
]
110244728
Glycosaminoglycan binding proteins [BR:
epa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110244728
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
110244728
NCBI-ProteinID:
XP_020906601
UniProt:
A0A913XM70
LinkDB
All DBs
Position
Unknown
AA seq
1638 aa
AA seq
DB search
MAAWTLGIIVGSLILALLSSVHGISSQDVLAATRRRGSDFVWTFGLRDLPNNTTKTSGLC
TKRPRSSGHGFEEDIAYRFDSKYIAISTQELFPRKFPTEYVIMATFRAERDNAGSLFSIL
TSDRQLSLAFTLNPVGLKYLKPDGNIGDVTFPTSLSDGQWHRIAISVGDRAIVMVADCQE
QVRREFVLAKPKDFPKLINTTGITVLGSDFNDGSYFRGVLHDLRIVEDAKKMGLYCLEFI
PDCDRPLPSVVPFKSRRTRQAGGIPERPGTVTIGNTKYIPGEPGDPGPPGEPGDPGRRGL
KGFAGEKGSLGPPGAPGPPGPQGPQGKRGPGGPSIKVVWPGETKGPGARPPASSQMVIPP
ALPGDQGPRGRRGPNGSPGQPGGPGEKGSQGDPGVMGPPGPLGMRGTRGLAGKRGPPGPD
GPRGPPGALGPKGDRGLDGIPGLPGHKGPRGILGPRGDSGDKGEPGARGERGEPGGSGVP
GERGPQGEAGPKGPPGPRGLLGSPGERGPPGPSGPTGPVGAPGIQGIQGMRGPPGPTGIP
GPAGASGPKGEPGKIGMPGFPGSDGLPGYPGIEGPPGPKGNRGPPGPRGPQGYQGPPGPK
GNQGKRGTTGPKGDEGTAGFPGEKGDDGPRGEDGSPGGPGLPGPEGPEGPKGRTGLPGPP
GISGLPGPKGEQGVSGMTGYPGQAGAKGAQGPPGSRGRDGPKGSRGEAGKIGPRGPRGRR
GPRGERGSPGTPGAAGNKGAAGEPGVSGDRGPMGPPGPQGDRGAPGPAGMMGLPGRPGLP
GFPGPRGETGPQGKSGPVGNPGMPGPRGPPGSSGPQGPKGDLGRAGEPGEPGMAGDAGKD
GKKGEPGKAGVPGKDGLPGPAGKTGPKGARGLPGPMGPKGVEGPNGAPGQAGPIGPRGEP
GLPGPQGPNGRPGPTGANGSPGEKGSKGEEGPRGDPGPAGKPGGPGKPGPEGPQGPSGDD
GEKGAAGPAGPSGKKGDRGPKGPPGPPGPVGNPGKSGPQGPPGEQGVQGPVGPRGEKGPD
GGRGPPGPQGQPGVPGVPGPRGQKGERGASGPSGKIGPPGARGARGPAGPKGDQGEVGDP
GANGRVGDKGDRGPKGDSGAPGVAGTPGRPGEPGQKGGRGDPGPQGPQGPRGPPGPSGDT
GPIGPPGPPGPTGPQGPQGAKGSRGQDGEDGAPGKPGPRGAPGRRGDDGPPGPAGQPGEA
GPKGYAGKDGEPGDRGNTGPPGPQGPVGPPGAQGPRGQRGLPGEQGVPGAPGDVGPQGIT
GPPGAVGAVGRKGDKGDKGNSGEKGDKGWNGFLGPTGPSGPQGEKGDQGLPGLIGHPGPK
GDKGDDGPDGPVGPDGPAGPRGRGGGAGSKGDRGALGPRGEPGPVGPPGPPGPPGDVSHL
IAAYMSPNTGTDKGETRRKRSLDEFSDMREPLDDEMLDSIKALRSRIEEIRRPRGDSRGN
PARTCKDLKLCNRAKKDDHYWIDPNNGCTEDAIKVFCNFTSGGETCIYPDNRTRSGERKS
WRKVDGAEWFSEYDGGYEISYKDVGKTQLNFLRLLSEKAVQNFTYYCSGSVAWYDNVAKS
YEKAIRLQGDNDDVIGYTKNRFSIKVVHDGCQNKEKDGKAIFQIVTEDLNQMPIVDFAPG
DLKESLEFGFEVGPICFS
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttggacattaggtatcatcgttgggtctttaatactggccctgctttcttct
gtccatggtatttcgtcccaggacgtactcgcggcaaccagacgtagaggtagtgacttt
gtgtggaccttcggtctaagagatctaccaaataacacaaccaaaacctctggcctgtgc
acaaaaaggccccgtagtagtggccatggatttgaagaagatatcgcctacagattcgac
agcaaatatattgccatttcgactcaagaactctttccaaggaagtttcccacggaatat
gtgataatggcgacgttcagagcggaacgtgacaacgctggcagtcttttttctatctta
acctctgatagacaactgtcgctggcgtttacactgaatcctgttggcttgaaatacctg
aagcccgacggcaacataggtgatgtaacattccctaccagtctttcagacggacaatgg
catcgaattgcaattagtgtaggagacagggcaattgtcatggtggccgactgtcaagaa
caggtccgccgtgagtttgtgctggcaaaaccgaaagattttccaaaactaataaatact
acaggtattacagtacttggtagtgacttcaacgacggctcgtacttcagaggcgttctt
catgatctcagaatagtagaagacgcgaagaaaatgggactttattgtttggagtttatt
cccgattgtgaccgacccctccctagtgtggttcccttcaagagcagaagaacacgtcaa
gctggyggcattcccgagagaccaggcactgttaccattggcaacacaaaatatattcca
ggagaaccaggtgatccaggtcctccaggcgaaccaggagatcctggtaggcgaggtttg
aaaggttttgctggagagaaaggctccttaggaccaccgggagcacctggaccgccaggt
ccacaaggaccacaaggsaaaaggggccctggaggaccatcaatcaaagtcgtatggcct
ggggaaaccaaaggaccrggagcgcgacctccagcatcttctcaaatggtcattccaccc
gcacttcctggtgatcaaggcccacgcggtcgtcgtggcccgaacgggtccccgggccag
ccgggaggtcctggagagaagggttctcagggtgaccctggtgtgatgggaccaccagga
ccactgggcatgagaggaacaagaggacttgctggaaaaaggggaccgcccggacctgat
ggaccaagaggaccacctggagccttgggaccaaagggtgatagaggcttagacggtatt
cctggtcttcctggtcataaaggtccacggggtatcctagggcctcgtggtgactctggw
gataagggagaacctggtgctagaggagaaagaggagaaccaggaggctctggagtacca
ggagaaagaggaccccaaggcgaggcaggtcctaagggaccacctggaccacgtggtctt
ttgggttctccaggtgaacggggaccaccaggaccatccggtccaacgggtcctgttggt
gctcctggtattcaaggtattcaaggcatgagaggaccaccgggtccaacaggtattcca
ggtcccgccggagccagtggaccaaagggtgagcctggcaagatcggcatgcctggattc
cctggttcggatggcctaccaggctaccctggaatcgaagggccacctggaccaaaaggc
aaccgaggaccacccggaccaagaggaccacagggataccaaggacctcctggaccaaaa
ggcaatcaaggcaaacgtggaacaacagggcctaagggagatgagggaactgcaggattc
cctggagagaaaggagacgacggaccaagaggagaagacggatcacctggtggaccagga
ttacctggcccggaaggaccagaaggacctaagggtcgcactggattacctggacctcct
ggaatatctggactacctggccctaagggagaacaaggcgtttctggtatgactggttat
cctggacaggcgggagcaaagggagcccaaggaccacctggaagtagaggacgcgatggt
cctaaaggatcacggggagaagcaggaaagattggcccacgtggacctcgtggaagacgt
ggtccaagaggagagcgaggaagtcccggtacgcctggtgctgcaggcaacaagggtgcc
gctggtgagcccggtgtatcaggagatcgtggtccaatgggaccacctggaccacaggga
gaccgcggagcacctggtccagcggggatgatgggtcttcctggacgccctggtctacct
ggattccctggaccacgtggtgagacgggacctcaaggcaaatcaggtccagtcggtaac
ccaggaatgccaggaccwcgtggacctcctggaagcagcggacctcaaggaccaaaaggt
gatcttggtcgtgcgggtgagcctggagaacctggaatggcaggggatgctggaaaagac
ggcaaaaagggtgagcctggtaaagcaggtgttcctggaaaagacggattaccgggacct
gccggaaagaccggaccaaagggagccagaggattgccgggcccaatgggaccaaagggc
gttgaaggacctaacggtgcacctggtcaagccggaccgattggaccacgcggtgagcct
ggaytaccaggacctcaaggacctaatggaagacctggtccyacaggagccaatgggagc
cctggagagaagggtagcaagggtgaggagggaccacgtggtgatccaggtccagcagga
aaaccgggaggaccgggtaaaccaggacctgaaggaccacagggtccatctggagatgac
ggtgagaagggtgcagcaggtccagccggaccatcaggcaaaaaaggagaccgcggacca
aagggaccaccaggaccacccggtcccgtcggaaatcccggtaaatctggaccgcaggga
cctcctggcgaacaaggtgtgcaagggccggttggaccacgtggagaaaagggccctgat
ggtggacgaggaccccctggtccccagggacaacctggtgtacctggagttcctggtcca
cgtggacagaaaggagaacgaggygcatccggaccatcggggaagattggaccacctggt
gcacgaggagccagrggaccagctggaccaaagggagatcaaggtgaagttggcgatccc
ggtgctaatggaagagtcggtgataagggtgaccgtggaccaaaaggtgattccggagcc
cctggcgttgctggaacacctggtcgacctggtgaaccaggacagaagggaggacgtgga
gatcctggaccgcagggaccacagggaccccgtggmcctcctggaccatctggagatact
ggaccaattggcccaccrggacctcctggaccaactggaccccaaggcccacaaggagct
aagggtagtcgtggccaagacggagaagatggcgcacctggaaaacccggcccacgcggt
gcaccaggtcgccgtggagatgatgggcccccaggaccggctggccaaccaggtgaagcc
ggtccaaaaggatatgccggaaaagatggagaacccggagacaggggtaacactggaccg
ccaggacctcaaggtcctgttggaccccccggagcacagggacctcgtggacaacgcggt
ttacctggagagcaaggtgttccgggcgctcctggtgatgtaggaccgcaaggcattact
ggtcctcccggagctgttggcgcagttggcaggaaaggcgataagggtgataaaggaaat
tcgggagagaaaggagacaagggctggaatggattcctcggtcccacaggaccttctgga
ccgcagggagagaagggagatcaaggcctcccaggtttaatcggccaccctggacccaag
ggagacaagggtgacgatggacccgatggacctgtcggaccagatgggcctgcaggacca
agaggaagaggtggtggtgctggatccaaaggagacagaggcgcattaggaccaagggga
gaacccgggccagtgggaccgcctggaccaccaggaccacctggagatgtgagtcacctc
attgcagcgtatatgtcacccaacactggaacagacaaaggagagaccagacgaaaacga
tctttagatgaatttagtgatatgcgagaaccattggacgatgagatgttggactctatc
aaagctttgcggtcacgaatcgaagagattcgccgtccacggggcgactcacggggtaac
cccgctcgaacttgtaaagatctcaagttgtgcaaccgagccaaaaaagatgatcactac
tggattgatcccaacaacggctgcactgaggacgccattaaagtcttctgtaacttcacc
tctggtggagaaacatgtatttatcctgacaataggacaagatcgggagagcgtaagagc
tggaggaaggtcgacggagcagaatggtttagcgaatatgatggtggatatgagatctcs
tacaaagacgtaggcaagacgcaactcaatttccttcgtctgttaagcgaaaaagctgty
cagaatttcacctattattgcagtggttctgtggcatggtacgacaatgttgccaaatcg
tacgagaaggcaattcgactgcaaggcgataacgacgatgtgattggatatacgaagaac
cgatttagtatcaaggttgttcacgacggatgccagaacaaggaaaaagacggcaaagct
atattccaaattgtaactgaagatcttaaccaaatgcccattgtagattttgctcccgga
gatttgaaggaatcgttagaattcgggtttgaagtaggcccaatttgttttagttag
DBGET
integrated database retrieval system