KEGG   Exaiptasia diaphana (Aiptasia): 110246420
Entry
110246420         CDS       T05080                                 
Name
(RefSeq) spliceosome RNA helicase Ddx39b
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
epa  Exaiptasia diaphana (Aiptasia)
Pathway
epa03013  Nucleocytoplasmic transport
epa03015  mRNA surveillance pathway
epa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:epa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110246420
  09122 Translation
   03013 Nucleocytoplasmic transport
    110246420
   03015 mRNA surveillance pathway
    110246420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:epa03019]
    110246420
   03041 Spliceosome [BR:epa03041]
    110246420
Enzymes [BR:epa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     110246420
Messenger RNA biogenesis [BR:epa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     110246420
Spliceosome [BR:epa03041]
 Complex C
  Other components
   EJC/TREX
    110246420
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110246420
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas3-like_C_2 Thioredoxin_6 ApbA
Other DBs
NCBI-GeneID: 110246420
NCBI-ProteinID: XP_020908422
UniProt: A0A913XQ40
LinkDB
Position
Unknown
AA seq 430 aa
MAEDGDAETELLDYEEEENDAPAEGAQAIKDQAKKDVKGTYVSIHSSGFRDFLLKPELLR
AIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLV
MCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGISIKKDQQVFKTNCPHIVVGTPGRILA
LTREKTLNLKHVKHFILDECDKMLEQIDMRRDVQEVFRMTPHEKQVMMFSATLPKDIRPV
CKKFMQDPMEVYVDDETKLTLHGLQQYYLKLQDREKNRKLLDALDALEFNQVIIFVKTVA
RCTALAKLLVNQNFPAICIHRGMAQEERLSKYQQFKNFQKRILVSTDLFGRGMDIERVNI
VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEKDAKVLNEVQDRFEVNVGELPEEI
DITSYIEQAR
NT seq 1293 nt   +upstreamnt  +downstreamnt
atggccgaagatggtgatgctgaaactgaattgttggattacgaagaagaagaaaacgat
gccccagcagaaggagctcaagcgataaaagatcaagcgaagaaagatgttaaaggcacc
tatgtcagcatccatagttcaggttttmgagattttcttctcaaacccgaactcctgaga
gcgatcgttgactgcgggtttgaacatccctctgaagttcaacatgaatgtatcccacaa
gccatccttggtatggatataatctgtcaagcaaagagtggtatgggtaagactgctgtc
tttgtccttgccactttacaacagcttgagcccgttgatggtcaagttagtgttttggtt
atgtgccacacacgagagttagcctttcaratccacaaagagtatgaaaggttttgtaag
tacatgagtaatatcaagatagcagttttcttcggaggaattagcatcaagaaagaccag
caagtattcaagaccaaytgtcctcacattgtggttgggactcctggacggatcctagca
ctgacaagagagaagaccttgaacctcaagcatgtcaagcactttatacttgatgagtgt
gataaaatgctygagcaaattgacatgagacgagatgttcaggaagtatttcgtatgaca
ccmcatgaaaaacaagtsatgatgtttagtgccactctacctaaagatatccgkccagtt
tgcaaaaagttcatgcaagatcccatggaagtgtatgtagatgatgaaacaaagctgaca
ctacacggattacaacagtattacctcaagttacaagacagagagaaaaaccgaaagctg
cttgatgcccttgacgccttagaattcaaccaggtgattatatttgtcaagacagtagca
agatgtacagctttagccaaactcctagtgaaccagaatttcccagccatttgcatccat
agaggaatggcacaagaagaaagattatckaaataccaacaattcaagaatttccaaaag
agaatcctagtatcaacagacttatttgggcgtggtatggacatagaacgtgttaatatt
gtcttcaactatgacatgccagaagattcagatacctatytacacagggttgcccgtgct
ggtcgatttggtacaaagggtctggccatcacctttgtgtcagatgagaaagatgctaaa
gtattaaatgaggtacaagacagatttgaagtgaatgtaggagaactaccagaggaaatt
gatattacatcgtatattgaacaagcacgttaa

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