Exaiptasia diaphana (Aiptasia): 110249714
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Entry
110249714 CDS
T05080
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
epa
Exaiptasia diaphana (Aiptasia)
Pathway
epa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
epa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110249714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
epa03019
]
110249714
03041 Spliceosome [BR:
epa03041
]
110249714
03009 Ribosome biogenesis [BR:
epa03009
]
110249714
03016 Transfer RNA biogenesis [BR:
epa03016
]
110249714
Enzymes [BR:
epa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110249714
Messenger RNA biogenesis [BR:
epa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110249714
Spliceosome [BR:
epa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110249714
Complex C
U4/U6.U5 tri-SnRNP related factors
110249714
Ribosome biogenesis [BR:
epa03009
]
Eukaryotic type
Pre-60S particles
Helicases
110249714
Transfer RNA biogenesis [BR:
epa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110249714
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
110249714
NCBI-ProteinID:
XP_020911956
UniProt:
A0A913Y011
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MADAFGEEDIFAVFDQDAPVDNSKKRKYGDGKNEKPSSSSENPQAXEKRDIKDVLNDPLV
FDVDDSASPGPSSSSKKQKIDDTESLLESVPQVDHITVDTIEACTHEVAIPSGFEYKPLQ
SKKDAKPAKEYPFILDPFQKEALKCLZNNQSVLVSAHTSAGKTVVAEYAIAMSLKNKQRV
IYTTPIKALSNQKYRELYEEFQDVGLMTGDVTINPSASALVMTTEILRSMLYRGSEVMRE
VAWVVFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWITHLHKQPCH
VVYTDFRPTPLQHYVYPSGGDGLFLVVDEKGDFREENFNKAIAVIRDGGTDPGSLKGRKG
GTKGPSNTFKIVKMIMERNFQPVIIFSFSKKECEAYALQMSKLDFNTTQEKGLVEEVFNN
AIDCLSDDDKKLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFAEGLIKALFATETFA
LGLNMPARTVVFSSSRKFDGKDFRFITSGEYIQMSGRAGRRGLDERGIVILIVDEKMGPD
VGKSLLKGHADPLNSAFHLTYNMVLNLLRVEEINPEIMLEKSFYQFQNYSAIPDMIEKIK
KLEKQRDEFEIPNEESITAYYKIRQQLKKLGDDMLAFIHQPKYCLPFMQPGRLVKIQNRD
VDFGWGVVLNFQKKANQKSGGPISDAIYVLEVLVKCSSKRIRSADGEMPQPCGPDEKGEM
QVVPVLLHLVKRLSSVRLYIPKDLRSPDSRQSVGKSIQEVSKRFPDGLPLLDPIEDMGIK
DDGLKKIIRKIEMLEHRMYSHPLHKDASLDSLYKLCEEKAQIIDKAKTARKELKKARTIL
QLDELKCRKRVLRRLGYSTAADVIELKXXFGCSGDELLLTEMIFNGVFNDLTTEQSVALL
SCFICEERSDELPKLKEELAGPLRQMQESARRIAKVSQEAKMDLDIEDYVESFRPHIMDV
VFAWANGSSFSHICKMTDIFEGRXY
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgctttyggcgaagaagacatttttgcagtttttgaccaagacgcccctgta
gacaactcaaagaagcgaaaatatggcgatggaaaraacgagaaaccttcatcctcwagt
gaaaaccctcaagcgakygagaaacgcgacataaaagatgttttgaacgaccctttggtt
ttcgatgttgacgattctgcaagtcctggaccaagtagttcgtcaaagaaacaaaaaatt
gatgacacagaaagtttgttagagtctgttccrcaagttgatcacatcactgtagacaca
atcgaggcttgtacgcatgaggttgctattcccagtggatttgaatataaacctttgcaa
tcaaagaaggatgcaaaaccagccaaggaatatccatttatcctggatccctttcaaaaa
gaagcwctcaagtgtctasaaaacaatcaatcagtgcttgtgtctgctcatacatcagca
ggaaagacagttgttgcagaatatgctattgcaatgtccttaaagaataaacaacgagta
atctacacaacgcctatcaaggctcttagcaaccaaaagtaycgtgaattatatgaagag
ttccaagatgttggtctgatgacaggtgaygtgaccatcaacccatcwgctagtgcactt
gtcatgactactgagattcttaggagtatgctgtatagaggctcagaggtcatgagggag
gtggcctgggttgtttttgatgaaatccattacatgagagataaagagcgtggtgttgtg
tgggaagagaccatcatccttctccctgataatgtccactacgtgttcctgtctgccact
attcccaatgcacggcagtttgcagagtggataacrcatctccataagcagccgtgccay
gttgtrtacactgatttccgtcctacaccacttcaacattatgtttatccttctggagga
gatggtttgttccttgttgttgatgaaaagggtgattttcgtgaggagaatttcaacaaa
gccattgcagttataagagatggaggaacagatcctggttcattaaaaggacgcaaagga
gggaccaaaggtccatcaaacacattcaagattgtcaagatgattatggagagaaacttt
cagcctgttatcatcttcagcttcagcaaaaaagagtgtgaagcttacgcactgcagatg
tccaaactggacttcaacacaacgcaagagaaaggattggtagaagaagtgttcaayaat
gccatagactgtttatccgacgatgacaagaaactacctcaagttgaacatgttcttccc
ttactgaagagagggattggtatccaccattctggacttttacccatcttgaaagagact
atcgagattctatttgctgaaggacttatcaaggcactgtttgctacagagacgtttgct
ttgggtctcaacatgccggcaagaacggttgtcttctcaagctcacgaaaattcgatgga
aaagattttagatttataacatctggtgaatacattcaaatgagtggacgagcagggcga
agaggtctggatgaaagaggcatcgttattctgattgtmgatgaaaaaatgggwccygat
gttgggaaaagtctactcaagggccacgcagatccgctgaacagtgctttccatcttacg
tacaatatggtcctgaatctgcttcgtgttgaggaaatcaaccctgaaataatgctggag
aaatctttctatcaatttcaaaactattctgccatccctgacatgattgaaaaaatcaag
aaacttgaaaaacagagagatgaatttgaaatcccaaacgaggagtcgatcacagcgtac
tacaagatacgacaacagttgaagaaactaggagacgacatgttggcgttcatccatcag
ccaaagtattgccttccgtttatgcaaccaggacgacttgtaaagattcaaaatagggac
gtggactttggatggggtgtggtactcaatttccagaaaaaagcaaaccaaaagagcgga
ggaccaataagtgatgcgatatatgtgttagaagttcttgtaaaatgttcaagtaaaagg
attcggtctgcagatggtgagatgccgcagccatgcggtcctgatgagaaaggggagatg
caggtcgtgcctgttttattacatcttgttaaacggctcagcagtgtgagattatatatt
cctaaagatttacgatcccctgatagcagacaaagtgttggtaaatcgatacaggaggtt
tctaagcggtttcctgatggcttaccgttattagatcctattgaagatatgggaatcaaa
gatgatggcttgaaaaaaattataaggaaaatagaaatgcttgaacatcgaatgtactca
catccacttcataaggacgcctctctcgactcgctatataagctatgtgaagaaaaagca
cagatcatcgacaaagcaaagaccgcacgaaaagaacttaaaaaagccaggacgatatta
caactggatgaactaaaatgtcgaaaaagagtcttaagaaggctgggttattctactgca
gctgatgttatcgagctaaaannnnnntttggttgtagtggtgacgagcttttgttaact
gaaatgatttttaacggtgtgttcaacgacttgacaaccgaacaaagtgtcgccctcttg
agctgttttatttgtgaggaacggagcgacgagctacccaagttaaaagaagagctcgct
ggtccattgagacagatgcaggagtcagcccgccgcattgctaaagtctcccaagaagcc
aaaatggatttagatatcgaggattacgtggagtccttccgacctcacatcatggatgtc
gtgtttgcttgggcgaatggctcttctttctctcatatttgtaaaatgactgatatattt
gaaggtaggntatattaa
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