Exaiptasia diaphana (Aiptasia): 110254834
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Entry
110254834 CDS
T05080
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
epa
Exaiptasia diaphana (Aiptasia)
Pathway
epa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
epa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110254834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
epa03021
]
110254834
03019 Messenger RNA biogenesis [BR:
epa03019
]
110254834
Transcription machinery [BR:
epa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110254834
Messenger RNA biogenesis [BR:
epa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110254834
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
110254834
NCBI-ProteinID:
XP_020917539
UniProt:
A0A913YAT4
LinkDB
All DBs
Position
Unknown
AA seq
1454 aa
AA seq
DB search
MDVEEQSIVEEYASSLEDLTFNSKPLINVLTMLAEENSRYASSVTKLIEERIYKVSQQHK
LPSLYLLDSIIKNVGGIYLNLIAQVLVKVFVSVFEKGDEKTRKDLYKLRHTWPQYFSAKI
LHDVDVNINQLDPGWPITAVPPPSPSIHVNPKFLKKAEVVTPPAPVKXPDVSKENEKEVL
MEHQKRLAELQRLQEEQLRLTEQEIQEHQLKRDLILKKQEQERKALMTQQQQLLLTLRLE
SELGTAELNEKTSITAVSTKAEMTPSSHSITTSRDPRLQRQEQAPHNNNNRSQQQGQKDN
EVNHRXALDPKQRDQSNNHRTKKNFERTHGPTMSNNNSKRRSRSQSPPNERETKFQRIDG
YPKNRDDRLDIDKHPRDDRQPKRRRSFDGSENSSDTRMVFQDNQGKFEPRGYRGRGERGK
GDRGRGDRGRGDRGRGDRGRGDRGRGDRGRGDRGRGTRGRDRDRSGKPIRDEKGQYHRGP
RHREDEMRQRTVHLKPESRNSPQAQFDDIEXETVPDLVKPRPLFSKEEVAELQSSEFVLN
ENDSESAXIPQELSLEHKSVILEEAKRRVEAGHISQEQYIELIDKLAEFYELQRQQELEI
QHSDENILEQNVNENPEVAGPPGPEPLGPESLGPESLGPGPRNQRGRGGRSNRRSWKRRP
VEGTRQFHRDGPPRKEQRTDESWRRDGPPRSNPGGVFDGPXRPSRNPRMDDKRRDQPPYI
REGRPPMDRPGPPDGGPWRESERLPPHDPGSSRQRRPPPEKPGTIIPQNIDELEMRSRGR
DPAMNPRHFGERIHQDEPLLGRGRPLHAEVPXLGHGRPVEHFQGPXDGPGHEXPPHLRPM
PHPIEPGTSIRIHGPPREIILSHLPESDQIPGSHAGAPGIHHGPHPVETGRHPDYGPEPG
LPVPHHHGEPGPGQHPGEPDLRLLIRNREPHPLPGKPDLHQQRGQPGHPPVISQGEPALL
PGMHPMEPGHHSVXLHRESSPVRHLGEAPDLPGQPGLYPDHHISDAGRQEIIIGPGQQGN
AGPHGXPHLLGSGQGSPQRHGTETPPPSIPSGAPPTPSRMDKRTVDDLFSRLVQVGIIKV
AEEPVVBTPPRIXTPPLQQPLMKPHPMVPHPVSSSSAPIQGPXASQXSKMTPMNLQKLQE
MIEKSREASTVIPIISLDPHDLKKRHSAIIGLLYRGKQCSTCGLRFDGEAEAFYREHLDW
HFRRNRREKDGRRIAHKQWFIPLKDWLEYEEITDPEEKAHSSFFDAEKPNTESTTVNTQV
GDGSCPVMPTDTEAESVCDICQEKFEQFWEETQEEWHYKEAIRVGGKTYHEMCYQDAKSN
VEGTATEVEANVDNTESKEEPDERPEVKEETIEHKKEDEPKDANNTVEVPAKKEDQVTVV
KTESAESSEXQCSESCKDANGVSTQSDMKAMNEVKVXIEVTESNNSEVKIKEENKDEIDG
GGTSVIKTETTDKD
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atggacgtagaagaacagtctattgttgaggaatacgcgtcgtctttggaagatctaact
tttaactcaaaaccacttataaatgtgttaactatgttagccgaagagaacagtagatat
gcttcaagcgttaccaaactcatcgaagaacggatttataaggtttcacagcagcacaag
cttccttctctataccttcttgattctattatcaaaaatgttggtggtatatacttgaat
ctcatagctcaagtgttggtcaaagtgtttgtctctgtctttgaaaagggtgatgagaaa
actcgaaaagatttatacaagcttcggcatacttggccccaatacttttcagctaagata
ttacatgatgtagatgttaatatcaatcagttagaycctggatggccaataactgcagtc
ccaccaccatcaccctccattcatgttaatccaaaattcctcaaaaaggctgaagtagta
acaccaccagctcctgttaaagyaccagatgtatctaaagaaaatgagaaagaagttctt
atggaacatcaaaaaagactagctgaactacaaagacttcaagaggaacagcttcgactt
actgaacaggaaatccaggaacaccaacttaagagagatttgattctgaaaaagcaagag
caagaaagaaaagcacttatgacccaacagcaacaacttttgytaactttaaggcttgaa
tctgaacttggaacagctgaattgaatgagaaaacctctataacagctgtatccacaaag
gcagaaatgaccccrtcaagccatagcataacaactagtagagaccctagattgcaacgc
caagaacaggcaccacataataacaacaacagatcccaacagcaaggacagaaagacaat
gaagtgaaccatagacmrgcattagatccaaagcagagagatcaatctaataatcataga
actaaaaagaattttgaaagaactcatggtccaactatgtcaaataataactctaagaga
agaagtagaagtcaatctccaccaaatgagagggaaacaaaatttcaacgaattgatggt
tatccaaagaatagagatgatagactagatattgataaacatccaagagatgacaggcaa
cccaaacgacgtagaagttttgatggaagtgaaaattcaagtgatacaagaatggtattt
caagataatcaaggaaaatttgagccaagaggatatagaggaagaggggaacgagggaaa
ggagacagaggaaggggtgacagaggaaggggtgacagaggaaggggtgatagaggaagg
ggtgatagaggaagaggtgatagaggaagaggtgatagaggaagaggtaccagaggaaga
gatagagatagaagcggtaaacctattagagatgaaaaaggtcagtaccacagaggacca
aggcatagagaagacgaaatgagacagaggactgttcatttaaaacctgaaagtcgcaat
tcacctcaagcacagtttgatgacattgaaamtgaaacagttccagatcttgttaaacca
aggcctttattttctaaagaagaggttgctgaattacagtccagtgaatttgttttgaat
gaaaatgattcagaaagtgcamctataccacaagaacttagtttagaacacaaaagtgtc
atcctggaagaagcaaaaagacgtgttgaagcaggtcacatatcccaagaacagtacatt
gaacttattgataaactagcagaattctatgaactccaaaggcagcaagaattggaaatt
caacattctgatgaaaacattcttgagcaaaatgtgaatgaaaaccctgaagttgctggt
cctccaggtcctgaacctctaggtcctgaatctctaggtcctgaatctctaggtcctggt
cccagaaaccaacgtggtagaggaggacgatcaaatagaaggtcttggaagagacgacct
gttgagggtactcggcaatttcatagggatggtcctcccaggaaggaacaaaggacagat
gaatcatggagaagagatggacccccaagaagcaatccaggtggtgtttttgatggacca
cyaaggcccagtagaaatccaagaatggatgacaaaagaagagatcaacccccatatatc
agagagggtagaccacccatggatagaccaggccctcctgatggtggaccttggagagaa
agtgaaaggttgcctcctcatgatcctgggtcttctcgccaacgccgtcctccaccagaa
aaacctggtaccattatyccacaaaatattgatgaattagaaatgagatccagagggaga
gatcctgctatgaatcctcgacattttggtgagcgaatccaccaggatgaaccattgctt
ggcagaggaaggcctctacatgctgaagtaccwcyacttggacatggaagacctgttgaa
catttccagggaccacyrgatggccctggscatgaawtgccaccacaccttagacctatg
cctcatcctatagagccaggaacatctattagaatacatggccctcccagggaaataatt
ctatctcatctcccagaatcagatcaaattcctggatctcatgctggggcacctggtata
caccatggaccacacccagttgaaactgggcgacatcctgattatggtccagaaccaggt
cttcctgtaccacatcatcatggagaaccaggtcctggacagcatccaggwgarcctgat
cttcgtctattaatccgyaatagggaaccacaccctcttcctggaaaaccagatcttcac
caacaacgtggacaaccaggtcatcctcctgtaatctcccagggggaaccagctcttctt
cctggcatgcaccctatggaacctggtcatcattctgttmatctccayagagagtcatct
ccagtgcgtcaccttggagaagcaccagatcttcctggacagccaggtctatatcctgac
catcacatctcagaygctggccgtcaagaaatcataattggaccaggacaacaaggcaat
gctgggccacatggtcmaccacacttrytaggttctggtcaagggtctccacaaagacat
ggcacagaaacaccaccaccatctatcccatctggtgcaccaccaacgccatcacgaatg
gacaaaaggactgtagatgaccttttttcaaggcttgtacaagttggtatcataaargta
gctgaagagccagtggttratacaccacccaggatakcaacccctcctttgcaacagccc
ctcatgaaaccacacccyatggtgccacacccagtttcatctagctcagcccccatacaa
ggacctymagcatctcaarcttctaaaatgacrcctatgaatttacaaaaactgcaagaa
atgattgaaaaatctagagaagcctctactgtaattccaataatatcactggatcctcat
gatttgaaaaagcggcattctgcaatcattggtctgttgtatagagggaagcagtgttcw
acatgtggtcttcggtttgatggagaagcagaagccttctatagggaacatttggactgg
cattttagaagaaatagaagagaaaaagatggaagaagaattgcccacaaacagtggttc
atcccacttaaagactggcttgaatatgaagaaatcacagatccagaagaaaaagcccat
agttctttttttgatgccgagaaacctaacactgagagcactacagtgaatacacaagtt
ggtgatggcagctgtccagtaatgcccacagatactgaagctgaatcggtttgtgatatt
tgtcaagaaaagtttgagcagttttgggaggaaactcaagaagaatggcactacaaagaa
gcaattagagttggtggaaagacctaccacgagatgtgctaccaagatgctaagtcgaat
gtggagggaactgcaacagaggtagaagcaaatgtagacaacacagagagtaaagaagaa
ccagatgaacgtcctgaagtgaaggaagaaaccatagagcacaagaaggaagatgaacca
aaggatgccaacaacacagtagaagtccctgcgaagaaagaagatcaagtaacagtagtg
aagactgagagtgctgaaagtagtgaasctcaatgtagtgaaagttgtaaggatgctaat
ggtgtgtcaactcagagtgatatgaaagcaatgaatgaagttaaagttmaaatagaagtt
actgaaagtaataattcagaagtgaaaataaaagaagaaaataaagatgagattgatggt
ggaggcacaagtgttattaaaactgaaactactgacaaagattag
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integrated database retrieval system
