Erwinia persicina: CI789_10370
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Entry
CI789_10370 CDS
T05618
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
epe
Erwinia persicina
Pathway
epe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
epe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CI789_10370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
epe03019
]
CI789_10370
03009 Ribosome biogenesis [BR:
epe03009
]
CI789_10370
Enzymes [BR:
epe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CI789_10370
Messenger RNA biogenesis [BR:
epe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CI789_10370
Ribosome biogenesis [BR:
epe03009
]
Prokaryotic type
rRNA processing factors
CI789_10370
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AXU95598
LinkDB
All DBs
Position
2227916..2231503
Genome browser
AA seq
1195 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTSFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPDGMGLIVRTAGVGKSAEAL
QWDLSFRMKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKREAVSAIEKRQGGVKAIIVPNDNMQ
TPHYSVLRVRSGEETQTLSYHLPKLHEAEMALPSEEEHAERKRPEQPALAAFVMPDAPPA
PLEESAEVAVTQPVEQPQVKAPAAAEQPGLVSRFFSGLKKLFAGEEKPAEQPQPQVVEEK
APETPAAPRGERRNNRRQNNNRRDRNGDRNDRNGERNDRNGERNDRNGERNDRNGERNDR
NGERNDRNSERNDRSGERNDRSAERTERAPRERNNESREGREDRRNNGNKRNGSQVDARS
ERMVPDEFERSETTQARPPRQERQRRRPGQNQEEKRPVVQEEKIVEPLIETAENLEEQED
NVQVMPRRKPRQLNQKVRIETAEQTAARSFDTEDTVTAEQPGASETVTETPDTDDRDSNN
MPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLANAASSPEMASGKVWITYPVAQGSD
HETHEEPGHSLVPAYGHADVDAPHAAAAVAAADSISSATDESHEPAVVAPVAETPAIEAP
AAEQAAPVQHAEPQPENLPEITPVIAEETAAIDAPVNEEPAVISAADETVAEETAAAAIP
AEAEDVQPEPPFVAVDAVAEIVEEAKQAEPQQQAAEIAHAAPVEVSDALEQQVAEVLHAP
EVTAEPVVAQEPHAPVPARDEPVAEAEAPVAAEPVVNAPVVTETAPAETVPAAQPAQSHF
KLHATAPMTKAPAPAYQPEAPRQSDWVRPEFNFEGKGSAGGHAATHQATAPATRP
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgataaacgcaactcaacaagaagagttgcgtgtcgccctcgttgac
ggacaacgtctgtacgatctggatattgaaagccctggacacgaacagaaaaaagccaac
atctataaaggcaagattacccgcattgaacccagccttgaagccgcatttgttgactac
ggcgctgaacggcacggtttcctacctctgaaagaaatttcccgcgaatacttccctgcc
aactacaacgcccatggccgtccgaacattaaggatgtcctgcgtgaaggtcaggaagtc
attgtacagatcgataaagaagaacgcggcaataaaggcgctgctttgacttcctttatc
agtctggcaggaagttacctggttctgatgccaaacaacccccgtgctggcggcatttcg
cgccgaatcgaaggcgatgaccgcaccgaactgaaagaggcgctttccgccctggaactg
ccagacggtatgggcctgatcgttcgcaccgcgggtgtgggtaaatcggctgaggcactt
cagtgggatctcagcttccgtatgaagcactgggaagcgattaaaaaggcggcggaaagc
cgtccggcacctttccttatccatcaggaaagtaacgttatcgttcgtgctttccgtgat
tatctgcgccaggacatcggcgaaattctgatcgacaacccgaaagtgctggagctggct
cgtcagcatattgccgcgctgggccgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaattccgctgttcagccactatcagatcgagtcgcagattgaatctgccttccag
cgcgaagtgcgtcttccttccggcggctcgattgttatcgactccaccgaagcgctgacc
gccattgacatcaactctgcacgcgccacgcgcggcggcgacattgaagaaacggcgttt
aacaccaaccttgaagccgctgacgaaattgcccgccagctgcgcctgcgtgacctgggt
ggcctgatcgttatcgattttatcgatatgacgccagttcgccatcagcgtgcggttgaa
aaccgtctgcgtgaagccgtgcgtcaggatcgtgcacgtattcagattagccatatttca
cgttttggcctgctggaaatgtcgcgtcagcgtctcagcccatcgctgggcgaatccagc
catcacgtctgcccgcgctgtagcggtaccggtacaatccgtgataacgaatccctggca
ctttccattctgcgtctgattgaagaagaagcgctgaaagaaaataccaaagaagtgcat
gctatcgttccagtccaggtcgcttcttatctgctgaatgaaaagcgtgaagccgtcagc
gcgatcgaaaaacgtcagggtggcgttaaagcgattatcgtgccaaacgataacatgcag
acaccacactactcagtgctccgcgttcgcagtggtgaagagactcagacgctgagttat
catctgcctaaactacacgaagccgaaatggcactgccttctgaagaagagcatgccgag
cgtaagcgtcctgagcaacctgcccttgccgccttcgttatgccagatgctcctccagca
cccctggaagaatccgcagaagtggccgtcacccagccagttgaacagcctcaggttaaa
gcccctgcggctgccgagcagccaggtctggtgagccgcttcttcagtggactgaagaaa
ctgtttgctggtgaagagaaacctgccgaacagccgcagccacaggtcgtggaagaaaaa
gcacctgaaactccagctgcgccgcgtggcgaacgtcgtaataaccgtcgccagaacaac
aatcgtcgcgaccgcaacggtgaccgcaacgatcgtaacggtgaacgcaatgaccgtaac
ggcgagcgcaatgaccgtaatggtgaacgtaacgaccgcaacggcgagcgcaatgaccgt
aatggtgaacgtaacgaccgcaacagcgaacgtaacgaccgtagtggtgaacgcaacgac
cgtagtgcagagcgtactgagcgcgcaccgcgtgagcgtaataacgaatcacgggaaggg
cgtgaagaccgtcgtaataacggtaataagcgcaacggttctcaggttgatgcccgcagc
gagcgcatggtgcctgacgaatttgaacgcagtgaaacaacgcaggctcgtccaccgcgt
caggaacgccagcgtcgtcgtccaggtcagaaccaggaagaaaaacgcccggttgtgcag
gaagagaagatcgttgagccgctgatcgaaaccgctgagaatctggaagagcaggaagat
aatgtacaggttatgccgcgccgtaagccgcgccagctgaaccagaaagtccgtatcgaa
accgctgaacagactgcagcacgctcgtttgacacggaagatactgttacggcagaacaa
cctggcgccagcgaaacggtgacagaaacccccgatactgacgatcgcgacagcaataat
atgccgcgccgttcacgccggtcaccacgccatctgcgcgtaagtggtcagcgtcgtcgt
cgttaccgtgacgagcgttatccaacacagtcaccgatgccgttggctaatgccgcttca
tcaccagaaatggcgtctggcaaggtgtggatcacatatccggtagcacagggtagcgat
cacgaaacgcatgaagaaccgggtcactccctggtacctgcttacggccacgctgacgtt
gatgcgccacacgctgctgcagccgtagcagccgcagacagcatcagcagcgcgacggat
gaaagccatgaacctgcagttgtcgctccggttgcagaaacgcctgcaattgaagctccg
gcagcagaacaggcagcccctgtacagcacgcggagccgcagcctgaaaatctgcccgaa
atcaccccggtgatcgcagaagagacggccgccattgatgcccctgtcaacgaagagccg
gctgttatttctgctgctgacgaaaccgttgcagaagagaccgcagccgcagcgattccg
gcagaagcagaagacgttcagccagagccgccattcgttgccgttgatgccgtggctgaa
attgttgaagaagccaagcaggctgaacctcagcaacaggcagcagagattgctcacgcc
gcgccggttgaagtcagcgacgcgcttgagcagcaggttgctgaagtgcttcatgcacca
gaagtgaccgcagagcccgtagttgctcaggaaccgcatgcgcctgtccctgcccgagat
gaacctgtcgctgaagcagaggcacctgtcgcggctgaacctgtcgttaacgcaccggtt
gtcactgaaacggctccggctgaaaccgtgcccgctgcacaaccggctcagagtcacttc
aagctgcatgctactgcaccgatgactaaagcaccggctccggcttaccagccagaggcc
ccacgtcagagcgactgggtgcgtccggagtttaactttgaaggtaagggatcggctggc
ggccacgcggctacccaccaggcgacggctccggccacacgtccttaa
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