Exiguobacterium profundum: OE059_00350
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Entry
OE059_00350 CDS
T08917
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
epf
Exiguobacterium profundum
Pathway
epf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
epf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OE059_00350 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
epf03400
]
OE059_00350 (mfd)
Enzymes [BR:
epf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OE059_00350 (mfd)
DNA repair and recombination proteins [BR:
epf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OE059_00350 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
Cas3-like_C_2
MFD_D3
RecG_dom3_C
AAA_22
IstB_IS21
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WED55348
LinkDB
All DBs
Position
62310..65837
Genome browser
AA seq
1175 aa
AA seq
DB search
MNALERFMVALPETNVIRERLQKVDRQLVTGLTTSAKALVLAGLVKSSSRRLVVVTHNMY
QAQKMFDQLESLIGPDKTLLYPIDETLAGELSLTSSPELLAARIDARTRLLDQTGGVVVV
PLGGLRRYVPSPEAWQDSRVMLKPGSDLDLADFAKQLTGMGYERTATVTTPGEFSVRGSI
LDVYPLTEARPYRIDLFDTEIDSIFTFDAETQRSLGVVGEVCITPATEFIATENQLKQAG
GALRKQYDRTVELIGNEVIRQALEEGVVTDIERLERGDLPEKVGKYSPLLYTSTLLDYVG
KDAVLILDEVARIDDAADVQDREEAEWFSSLIEKGEAVSNYTLAVPMHKVFRDLKQVAFS
LLPSRRSGIPESDTVHLSCRPLPAFHGQMHLLKQEVERWQQGDQRIVVLAGDKSRADKIE
ALLSDYGIASTFTNVDGELEPRRVSVIIGQIEGGFELSTSRLVVVSEEELFKRVTKRKRQ
TKNLTNAERIKSYQELKPNDYVVHVHHGIGKYLGIKTIEVGGIHQDYLHLVYAGDDALYV
PVDQIDLVQKYVGAEGKEPKIYKLGGTEWKKVKSKVAKSVEDIADELIKLYAAREASVGF
AFPPDDEEMGQFESSFPYAETEDQVRSIAEIKADMERSRPMDRLLCGDVGYGKTEVAIRA
AFKAVLAGKQVAFLVPTTVLAQQHYETMLERFSEFPINVSVMSRFRSKSEMTATKKGLKE
GTIDIVVGTHRVLSKDVTFANLGLVIIDEEQRFGVKHKERLKQLKTNIDVLTLTATPIPR
TLHMSMIGIRDLSVLETPPENRYPVQTYVMEYDGIVLREALERELARGGQAFFLYNRVEG
IERKAEEIRALLPDARIATAHGRMTESELESQLISFLEGEADILVSTTIIETGIDIPNVN
TLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYRKDKRLTEVAESRLQAIKEFTELGS
GFKIAMRDLSIRGAGNLLGAQQSGFIDSVGFDLYSQMLSEAIEERKDRMRGQAKQVVFKP
EITFQADAYIPDDYLSDSELKIEMYKRFKYVDTPSALFALQDELIERFGEFPEPVALLIQ
LTRLRIYGELAKVSRIKQTPGRIEIVLSKESTTALDVPSFMEWSMPLGRKLGVGQEDGAL
KLSLSGRMPLTELLNDADTVLEELMKRLVGDAVAK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctttagagagatttatggtggcgctccctgaaacgaatgtgattcgagagcga
ctccaaaaagtggaccgtcaattggtgacgggattgacgacaagcgcgaaagccctcgtc
ttagcgggactcgtgaaatcgtcatcgagacgtctcgtcgtcgtgacgcataacatgtat
caagcccaaaagatgttcgatcaacttgaatcactcatcggtccggacaaaacgctctta
tatccaatcgatgagacgctagcaggtgaactgtcactgacgtctagtccggaactgcta
gctgcccgaatcgatgcccgtactcgtctcctcgaccaaacaggaggcgttgttgtcgtg
ccgcttggtggattacgacgctatgtaccgagtccggaagcgtggcaagatagtcgcgtt
atgttgaagccgggaagtgacctcgatttagcggattttgcgaaacaattgacgggcatg
ggctacgaacgaacggcaacggtgaccacacctggtgaattttccgtacgagggagtatt
ctagacgtttatcctcttacggaagcgcgcccatatcgaatcgatttgttcgacaccgag
attgactccattttcacgtttgacgcggaaacgcaacgctcgcttggtgtagtgggggaa
gtgtgcattacgcctgcgaccgagttcatcgcaacggagaatcagctgaagcaggcgggc
ggtgcgcttcggaaacagtacgaccgaaccgtcgaattgattggaaatgaagtcatccgt
caagcccttgaagaaggagtcgtgacagacatcgagcggcttgagcgtggagacctcccg
gagaaagttgggaagtattcgccattgctctatacgtccacgctccttgactacgttggg
aaagacgccgtcctcattttagatgaggtggcacgaatcgatgacgctgccgacgtacag
gaccgcgaagaggcggaatggttctcttcactcatcgaaaaaggagaagccgtcagtaat
tacacgctcgccgtcccgatgcataaagtcttccgcgacttgaagcaagtggcgttctcc
ttgcttccgtctcgtcgttcaggtattccggagagcgatacggtccatttgagctgtcgt
ccgctaccggcgttccatggtcagatgcatctattgaaacaggaagtcgagcgatggcag
caaggtgatcaacgcatcgtcgtacttgcgggagataagtcgcgtgcagataaaatcgaa
gcgcttctttccgactatggaatcgcctcgactttcaccaatgtcgatggagagttagaa
ccgagacgtgtctcggtcatcatcggtcaaatcgaaggtggattcgaactgtcgacgagc
cgtctcgttgtcgtatcggaagaagagttattcaagcgtgtgacgaaacgaaaacgtcag
acgaagaatttgacgaatgccgaacgaatcaagagttaccaagagctgaagccgaatgat
tatgtcgtccatgtgcaccacggaatcgggaagtaccttggcattaaaacaatcgaggtc
ggtgggatccatcaggattacctgcacctcgtctatgcaggggacgacgccctctacgtg
ccggtcgatcaaatcgatctcgtccaaaaatatgtcggtgccgaaggaaaagagccaaag
atttataaactcggcggcaccgagtggaagaaagtaaaatcgaaagttgccaaatcggtt
gaagacattgctgatgagctcattaaattgtacgcggcacgagaggcctcggtcggtttc
gcgttccctccggacgatgaagaaatgggtcagttcgaatcctctttcccgtacgctgag
acagaagaccaggtccgttcgattgcagaaatcaaggcggatatggaacgctcccgtccg
atggatcgccttttgtgtggagatgtcggatacgggaaaacggaagtggcaattcgggcg
gcgttcaaagccgtactcgccggtaaacaagtggcctttcttgtcccgacgaccgtcctc
gcccaacagcattatgaaacgatgctcgagcggttcagcgaattcccgatcaacgtatcg
gtcatgagtcgtttccgttcgaagagcgagatgaccgcgacgaagaaagggttgaaagaa
ggtaccatcgacatcgtcgtcgggacacaccgcgtgttgtcaaaagacgtgacgttcgcc
aacctcggtctcgtcatcatcgatgaagaacaacggttcggcgtcaaacataaagagcgt
ctgaagcagctgaagacgaacatcgatgtcctgacgctgacggcgactccgattccacgg
acattgcatatgtcgatgatcggaatccgtgatttgtccgtattagagacaccgccagag
aatcgttatcctgtccaaacatacgtcatggaatacgacggcatcgtcttgcgtgaagcg
ctcgaacgtgaactcgctcgcggaggacaggcgttcttcctctataaccgcgtcgaaggg
atcgaacgaaaagcggaagagattcgggccttattgcccgatgcacgaattgctacggcc
catggacgtatgactgaaagtgagctcgagagccagttgatcagcttcctagagggcgag
gcggatattttagtctcaacgacaatcatcgagacgggaatcgacattccaaacgtcaac
accctcatcgtccacgatgccgacaaaatgggactgtcccagctctaccaactccgaggt
cgtgtcggacgttcgaatcgcatcgcctatgcgtactttacgtatcggaaagacaagcgc
ttgacggaagtggcagaaagtcgtcttcaggccatcaaagagttcacagagctcggcagt
ggttttaagattgcgatgcgcgacttgtcgattcgtggggccgggaacttactcggtgca
caacagtctggattcatcgattcggtcggtttcgatctgtactcacaaatgctctctgaa
gccattgaggaacggaaagaccgcatgcgtggacaagcgaaacaagtcgtcttcaaaccg
gagatcacgttccaggccgatgcgtatatccctgatgattacttgtcagatagcgaattg
aagattgagatgtacaaacgcttcaaatatgtagatacgccgagcgcgttgttcgccctt
caagatgaactgattgaacggtttggtgaattcccagaaccggtcgcgctgctcattcaa
ttgacacgtctacgtatttatggagaactggcaaaagtgagtcgaatcaagcagacgcca
ggacgcatcgagattgtcttatcgaaagaatcgacgacggctctggatgtcccgtccttc
atggagtggtcgatgcctcttggtcgcaagcttggcgtagggcaagaagacggcgccttg
aaactgtcactcagcggtcggatgccgctaacagagctcttgaatgatgccgatactgta
ttagaagaactgatgaagcggttggtgggcgatgcggtcgccaagtaa
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