Exiguobacterium profundum: OE059_00600
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Entry
OE059_00600 CDS
T08917
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
epf
Exiguobacterium profundum
Pathway
epf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
epf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OE059_00600 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
epf03021
]
OE059_00600 (rpoC)
03400 DNA repair and recombination proteins [BR:
epf03400
]
OE059_00600 (rpoC)
Enzymes [BR:
epf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OE059_00600 (rpoC)
Transcription machinery [BR:
epf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OE059_00600 (rpoC)
DNA repair and recombination proteins [BR:
epf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OE059_00600 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WED56712
LinkDB
All DBs
Position
115244..118816
Genome browser
AA seq
1190 aa
AA seq
DB search
MKIGLASSEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECYCGKYKRIR
YKGVICDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDMSPRALEEVI
YFASYVVTEPGDTPLEKKQLLSEKEFRLYREKYGSDFKADMGAEAIRTLLQDVNLEKEVG
ELREELKTVQGQRRTRAIKRLEVLDAFFTSGNNPDWMILEVLPVIPPELRPMVQLDGGRF
ATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGRRGRPVTGPG
NRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKEMALELFKPF
VMKELVGRGIASNIKNAKRKIEKMQPEIWGVLEEVIREHPVLLNRAPTLHRLGIQAFEPI
LVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNILNPKDGKPVV
TPSQDMVLGNYYISLEREDAVGQGKVFSNVNEALIAYQNGYVHLHSRVALPARTLNNPTF
TDEQNEKLLITTVGKMIFNEILPNTFPYLNEPTMENLQEATPDKYFIDKGANVAEEIASR
PIIDPFKKGFLGKVIAEVFQKFETTETSRMLDRMKDLGFKHSTKAGVTVGIADIIVLPDK
QEILDEAQKQVDQIMKSFRRGLITEDERYERVVRAWNEAKDEIQSRLMKSLNRLNPIFMM
SDSGARGNASNFTQLAGMRGLMAAPSGRIIELPIKSSFREGLTVQEYFISTHGARKGLAD
TALKTADSGYLTRRLVDVAQDVIIREEDCGTDRGIRVSALREGTEEIESLYDRLVGRTSF
ETVTHPETGEVLIDKNELITEDIARIIVDAGVEKVEIRTAFTCNTSHGVCKKCYGRNLAT
GSNVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEVFEARNPKGQA
VISEISGTVIDFTESRDKRELTVEGFSETRSYTIPFGARLRVQIGDTVEAGEVFTEGSID
PKELLAVRGVSGVQNYLLQEVQKVYRMQGVEIGDKHVEVMVRQMLRRVKVIESGDTPLLP
GSLVDISVFKEACKDAIRDGKHPATAKPVLLGITKASLETDSFLSAASFQETTRVLTDAA
IKGKRDYLLGLKENVIIGKLVPAGTGMAVYRDVELKEDEAPVALEDTTVE
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcggcttggcttcatcagagaagatccgttcgtggtcttacggtgaagtcaaa
aagccggaaacgatcaactatcgtacacttaaaccagagaaggacggattattctgtgaa
cgaatcttcggtcctacgaaagactgggaatgttactgtgggaaatacaaacgtatccgt
tataaaggagtcatttgtgaccgctgtggcgttgaagtgacgaaagcgaaagtgcgtcgc
gagcgaatgggccatatcgagctcgcggcaccagtttcgcacatctggtacttcaaaggg
attccaagccgcatggggcttgttctcgacatgtcaccacgtgcgcttgaagaagtcatt
tacttcgcatcttacgtggtcacagagccaggtgatactccgcttgagaagaaacaactt
ctctcggaaaaagaattccgtctctatcgtgaaaaatacggtagcgacttcaaagcagac
atgggtgctgaagccatccgtacacttcttcaagacgttaatcttgaaaaagaagtaggc
gagcttcgtgaagagttgaaaacagtccaaggtcaacgtcgtacacgtgcgattaagcgc
ttggaagttctcgatgcattcttcacttcaggaaacaatccagactggatgatccttgaa
gtacttcctgtcatcccaccagagcttcgcccgatggtacagcttgatggtggacgcttt
gcgacatctgacttgaacgatttgtatcgtcgagtcatcaaccggaacaaccgtctcaaa
cgtttgctcgacctcggcgcgccgaacatcatcgtgcaaaacgagaagcgtatgcttcaa
gaagcggttgacgctctcatcgacaacggccgtcgtggtcgtccggtaacaggtcctggt
aaccgtccgcttaaatcactttcacacatgttgaaagggaaacaaggtcgtttccgtcaa
aaccttctcggtaaacgggtcgactattcaggacgttcggttatcgtcgtaggtccgaac
ttgaagatgtatcagtgtggtcttccaaaagagatggcgcttgaactcttcaaaccgttc
gtgatgaaagagcttgtcggtcgcggcatcgcttcaaacatcaagaacgccaaacgcaaa
atcgagaagatgcaacctgaaatctggggcgtccttgaagaagtcattcgtgagcatccg
gtcctcttgaaccgtgccccgacacttcaccgccttggtattcaagcattcgaaccgatt
cttgttgaaggtcgtgcgattcgccttcacccactcgtatgtacggcatacaacgccgac
ttcgatggtgaccaaatggccgtccacgttccgctctctgcagaagcacaagcggaagca
cgtcttctcatgctcgctgcgcagaacatcttgaacccgaaagacggaaaaccagttgtt
acaccatcgcaggatatggtcctcggtaactactacatctcacttgaacgtgaagatgcc
gtcggtcaagggaaagtgttctcgaacgtcaacgaagcgttgattgcttaccaaaacggt
tatgtccacttgcactcgcgtgtggcacttccggcgcgtacgctcaacaacccaacgttc
acagacgaacagaacgagaaattgctcattacgacagttggtaagatgatcttcaacgaa
atcttgccaaatacgttcccatacttgaacgagccgacgatggaaaacttacaggaagca
acgcctgacaagtacttcatcgacaaaggggcgaacgttgcggaagaaatcgcatcacgt
ccaatcatcgacccgttcaaaaaaggtttccttggaaaagtcatcgcggaagtgttccag
aagtttgaaacgacggaaacaagccgcatgcttgaccggatgaaagatcttggcttcaag
cactcgacaaaagcgggtgtgacggttgggattgccgatatcatcgtacttccggataaa
caggaaatccttgatgaagcacaaaaacaagtcgaccaaatcatgaagtcgttccgtcgt
ggtctcatcactgaagatgagcgttacgagcgcgttgtccgtgcttggaacgaagcgaag
gatgaaattcaatctcgattgatgaaatccctcaaccgcctgaacccaatcttcatgatg
tctgactcaggtgcccgtggtaacgcatcgaactttacgcagcttgcgggtatgcgtggt
ttgatggccgctccatctggtcgcatcatcgaacttccaatcaaatcgtcattccgtgaa
ggtctgacggttcaagagtacttcatctcgactcacggggctcgtaaaggtcttgccgat
acagccttgaagacagccgattcaggttacttgacgcgtcgtctcgttgacgtagcgcaa
gatgtcatcatccgtgaagaggattgtggaacagaccgcggaatccgtgtttctgcactc
cgcgaaggtacggaagaaatcgaaagcttgtacgaccgtctcgtcggacgtacatcgttc
gaaacggtcacacaccctgaaacgggcgaagtgttgatcgataagaacgaattgatcaca
gaagacatcgcgcgcatcatcgttgatgcgggtgttgaaaaagttgaaatccgtacagcc
ttcacatgtaacacgtcacacggcgtatgtaagaagtgttacggacgcaacttggcaact
ggatcaaatgttgaagtcggggaagccgtcggtatcattgccgcacaatcaatcggtgag
ccaggaacgcagcttacaatgcgtaccttccacacaggtggggttgccggagacgatatc
acacaaggtcttccacgtatccaagaggtattcgaagcccgtaacccgaaaggtcaagcg
gtcatctcggaaatctctggtacggtcatcgacttcacagaatcgcgtgacaagcgtgaa
ctcacggtcgaaggattcagtgagactcgctcatacacgattccattcggagcgcgtctc
cgcgttcaaatcggcgacacagtagaagccggtgaagtcttcacggaaggttcgatcgat
ccgaaagaattgctcgccgtccgtggtgtatctggtgttcagaactatcttctccaagaa
gttcaaaaagtttaccggatgcaaggggtagaaatcggtgataagcacgttgaggtcatg
gttcgccaaatgctccgtcgtgtcaaagttatcgaatcaggtgacacaccacttctccct
ggatcactcgtcgacatcagcgtctttaaagaagcgtgtaaagatgcgattcgtgatgga
aaacacccagcgactgcgaaaccagtccttctcggaatcacgaaagcctcacttgagaca
gattcgttcctctcagcggcttcgttccaagaaacgactcgcgtcttgacagatgcagca
atcaaagggaaacgtgactatctcctcggactcaaagagaacgtcatcatcggtaaactc
gttccagctggtactggaatggccgtctaccgtgatgtggaactcaaagaagatgaggcg
ccagttgcgctcgaagatacaacagtcgagtaa
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