Exiguobacterium profundum: OE059_03665
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Entry
OE059_03665 CDS
T08917
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
epf
Exiguobacterium profundum
Brite
KEGG Orthology (KO) [BR:
epf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
epf03009
]
OE059_03665 (rlmD)
Enzymes [BR:
epf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
OE059_03665 (rlmD)
Ribosome biogenesis [BR:
epf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
OE059_03665 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_15
MTS
Methyltransf_11
PrmA
Methyltransf_12
PCMT
Methyltransf_4
TPMT
Mce4_CUP1
Motif
Other DBs
NCBI-ProteinID:
WED55968
LinkDB
All DBs
Position
700113..701477
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AA seq
454 aa
AA seq
DB search
MLPVKKNDRLDVHVHDLTHEGAGVARVDGYTLFVPNALPGETVEIVVTKTNKQYGFARLL
NVKEASADRVEPPCPIFYQCGGCQLQHFSYEGQLRQKRERVVDALKRLGQFDVPVHDTIG
MPEPWRYRNKAQVPFKQEGDRLVSGFYRPRSHDIVEMSECLIQDERNDQAIQVVRDVLDA
RGVPAYDEKTGRGVIRHVMARYGYHSGELMIVLITKTTKLKGVNEIVADIVERLPDVTSI
MQNVNPDKTNVILGATNKLLYGHETIGDKIAGLTFTISPHSFFQVNPVQTEKLYGKALEY
AQLSGTEQVVDAYCGIGTISLFLARKAAHVYGVEVVPEAIEDAKQNALVNEIDNVTYACG
AAEDVLPEWKKDGVNPDVIVVDPPRKGCAESFLETMVEMGPKRIVYVSCNVATQARDMRY
LADRGYRLMEVTPVDMFPHTAHVETVVLMSRVEK
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgctaccagtgaaaaagaatgatcgtctcgatgtccacgtccacgacctgacccacgaa
ggggcgggtgtggcacgtgtcgacggctatacgctgttcgtgccgaacgcgttaccgggt
gagacggtcgaaatcgtcgtgacgaagacgaacaagcagtacgggttcgcccggttgttg
aacgtgaaagaagcgagcgccgaccgcgtcgagccaccgtgcccgattttttatcaatgt
ggtggctgtcagctgcaacacttcagttatgaaggacaacttcgccagaagcgagaacgc
gtcgtcgatgcgctcaagcgtctcgggcagttcgacgtgccggtccatgacacgatcggg
atgcctgaaccttggcgctaccgcaacaaggcacaagtcccgttcaaacaagaaggagac
cgtctcgtttcaggcttctatcgccctcgttcccatgacatcgttgagatgagcgaatgt
ttgattcaagatgagcgcaatgatcaggcgatccaagtcgtccgtgatgtgttggatgca
cgtggcgtaccggcgtatgacgagaagacaggacgtggggtcatccgtcacgtcatggcc
cgttacgggtaccattcgggtgaactcatgatcgtcctcatcacgaagacgacgaaacta
aaaggcgtgaatgagattgtcgccgatatcgtcgagcgtcttccagacgtgacgtcgatc
atgcaaaacgtcaacccggacaagacgaacgtcatcctcggagcgacgaacaagttgctc
tacggccatgaaacgattggggataaaatcgcaggactcacgttcacgatatctccgcac
tcgttcttccaagtcaatccggtccaaacggagaagttgtacgggaaggcgctggagtac
gcacaactgtcaggtacggaacaagtcgtcgatgcctattgcggtatcgggacgatcagt
ctcttcctcgctcggaaagcggcacacgtgtatggtgttgaagtcgtaccggaagcgatt
gaagacgcgaaacagaatgcgctcgtcaatgagatcgacaatgtgacgtacgcatgtggt
gcggcggaagatgtgcttccagagtggaagaaagatggcgtgaatccggacgtgatcgtc
gtcgacccgccacgaaaaggctgtgcggaatcgttccttgagacgatggtcgagatggga
ccgaagcgaatcgtatacgtttcttgtaacgtcgcgacgcaggcgcgtgatatgcgttac
ctcgccgaccgtggctatcgcttgatggaagtgacaccggtcgacatgttcccgcatacg
gcgcacgttgagacggttgtattgatgtcaagggttgagaagtaa
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