Erwinia pyri: Q3V30_03000
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Entry
Q3V30_03000 CDS
T10311
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
epi Erwinia pyri
Brite
KEGG Orthology (KO) [BR:
epi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
epi03016
]
Q3V30_03000
Enzymes [BR:
epi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Q3V30_03000
Transfer RNA biogenesis [BR:
epi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Q3V30_03000
Prokaryotic type
tRNA splicing ligases
Q3V30_03000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Chlorosome_CsmC
Motif
Other DBs
NCBI-ProteinID:
WLS79497
UniProt:
A0AA50DKL9
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All DBs
Position
631259..632482
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AA seq
407 aa
AA seq
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MKNNYQTLQQAKGVPVKMWTNGVPVEPEAREQLLNTAKMPFIFRHLAVMPDVHLGKGSTI
GSVIPTKGAIIPAAVGVDIGCGMIAVRTSLMACDLPDNLSGVRSAIEQAVPHGRTNNRSG
RDKGAWQTPPQEVDSHWAKLAPRFKTLTQKHPALFKTNNYQHLGTLGTGNHFIEVCLDEC
QQVWVMLHSGSRGVGNAIGNLFIALAQKDMQRHIANLPDRNLAYFEEGSRHFNDYVEAVS
WAQDYARHNREAMMERVLAAMSRVISKPFSTHLEAVNCHHNYVERETHFGESVLVTRKGA
VSAQKDQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTAAKARFTVEDQRRAT
AHVECRKDKEVIDEIPMAYKDIDAVMAAQSSLVEVVHTLSQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacaactatcagactctgcagcaggcgaaaggcgtgccggtaaaaatgtggacc
aacggcgtaccggtggagccggaagcgcgtgagcagctgttgaacacggcgaaaatgccg
tttatctttcgccatctggcggtgatgccggatgtgcatctgggcaaaggatccaccatc
ggcagcgtgatcccgaccaaaggcgcaattatcccggcggcggtcggcgtggatatcggc
tgcggcatgattgcggtacgcacctcgctgatggcctgcgatctgccggacaatctgtcg
ggtgtgcgcagcgccattgaacaggcggtgccgcacggtcgcaccaataaccgttccggt
cgcgataagggcgcctggcagacgccgccgcaggaggtggatagccactgggccaaactg
gcaccgcgctttaagacgctgacgcaaaaacatccagcgctgtttaagaccaacaactac
cagcaccttggaacgctgggaacgggcaatcactttattgaggtctgcctggacgaatgc
cagcaggtctgggtgatgctgcacagcgggtcgcgcggcgtagggaacgccattggcaac
ctgtttatcgcactggcgcaaaaggatatgcagcggcatatcgccaatctgccggatcgc
aacctcgcttattttgaagagggcagcaggcattttaacgactatgtggaagcggtgagc
tgggcgcaggattatgctcgccacaatcgcgaggccatgatggagcgcgtgctggcggcg
atgtcgcgcgtcatcagcaagcccttcagcacgcatctggaagcggtgaactgccaccac
aactacgtggagcgggaaacgcactttggcgagtcggtgctggtgacgcgcaaaggcgcg
gtctcagcgcagaaagatcagatgggcattatccccggctcgatgggcgcgaagagcttt
atcgtacgcggcctgggtaacgaagagagtttctgttcctgtagccacggtgcggggcgc
accatgagccgcacggcggcgaaagcccgctttaccgtggaagatcagcgacgcgcgacg
gcgcacgtggagtgccgcaaagataaagaggtcatcgacgaaatcccgatggcttacaaa
gacattgatgctgttatggccgcccagtcttcgctggtggaagtggtgcatacgctgtca
caggttgtttgcgtaaaaggataa
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