Erwinia pyri: Q3V30_13300
Help
Entry
Q3V30_13300 CDS
T10311
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
epi Erwinia pyri
Pathway
epi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
epi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q3V30_13300 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
epi03019
]
Q3V30_13300 (rne)
03009 Ribosome biogenesis [BR:
epi03009
]
Q3V30_13300 (rne)
Enzymes [BR:
epi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Q3V30_13300 (rne)
Messenger RNA biogenesis [BR:
epi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q3V30_13300 (rne)
Ribosome biogenesis [BR:
epi03009
]
Prokaryotic type
rRNA processing factors
Q3V30_13300 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
WLS77458
UniProt:
A0AA50DIB8
LinkDB
All DBs
Position
2821845..2825735
Genome browser
AA seq
1296 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSNHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPEGMGLIVRTAGVGKSAEAL
QWDLSFRMKHWEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKREAVSAIEKRQGGVRAIIVPNDQMQ
TPHYSVLRVRSGEETQTLSYHLPKLHEAEMALPSEEEHAERKRPEQPALAAFVMPDAPPA
PQETAAVAAPAEAAAPTTAAPAQAPAATESGLMGRFLRGLKKMFAGEEKPAEQPQPAVVE
EKAPEEAAAPRGERRNNRRQNNRRDRNNGERGERYGDRSERSDRNGERNDRNGERNERNG
ERNERNGERNDRNGERNDRGAERGDRQERGERNDRNPRNDRNANRNERMTRDRDPAAESR
EENRRNKRANPATPEAQDELQPVAEEIQQQPRRERQPRRRQDEKRQPAQDENVVDIAPAV
VEEAMESDEHVQVMPRRKPRQLNQKVRIETAEQTAARSFAPEEETAPVQQHAVELPTADS
HSEADESEDRDSNSMPRRSRRSPRHLRVSGQRRRRYRDERYPNQSPMPLTFAAASPEMAS
GKVWITYPVAQATDEHEHEQSVVPEYGHQDTADAVAVAAAASSAEVADEAQPVHHAEPQP
ENSPEVTVVNTDETAAIETPVNEEPAVVSAADEPVADAVAQQAVPAKETQPAVEAVNEVE
EIVAQAKQADDKRMAEEASHQAAEAAADVSPSTEQQVEEVLSAPVAVAEPVVTSEPHAPV
PARDEPVIAPAPAAQPAATEATPAPAATEAASAPAVQPAATEAAPAPVAQLAATEAAPAP
VAQPAVTEAAPAPVAQPAATEAAPAPVTQPAVTEAAPAPVAQPAVTEATPAPVAQPAVTE
AAPAPVAQPAVTEAAPTPVAQQPAAPEAAPAAASHAEPLYKHHATAPMTKAPAPAYQPEP
ARHSDWVRPAFNFEGQGSAGGHAATHQATAPATRPE
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgataaacgcgactcagcaggaggagttgcgtgtcgcccttgtggat
ggacagcgcctgtacgacctggatattgaaagcccgggacacgaacagaaaaaagccaac
atttacaaaggtaagatcacccgcattgaacccagtcttgaagcagcctttgtggattat
ggcgctgaaagacatggcttcctccccctgaaagaaatctcccgcgaatactttcccagc
aactattccaatcacggtcgcccgaatatcaaggacgtactgcgtgaaggacaggaagtt
atcgttcagattgataaagaagagcgtggcaataaaggcgcagccttaaccacctttatc
agcctggcgggcagctacctggtgctgatgccgaacaatccccgtgccggaggtatctcc
cgccgtatcgaaggtgatgaccgtaccgagctgaaagaagcgctctccgcacttgagttg
ccggaaggtatgggtctgatcgtacgtaccgcaggcgtgggcaaatctgccgaagcgctg
cagtgggatctgagcttccgtatgaagcactgggaagcgattaagaaagctgccgacagc
cgccctgcgccgttcctgatccatcaggagagcaacgtcattgtccgcgccttccgcgac
tatctgcgtcaggatatcggtgagatccttatcgataacccgaaagttctggagctggcg
cgtcagcacatcgctgcgctgggtcgtcccgatttcagcagtaaaatcaagctttacacc
ggcgaaatcccgcttttcagccattatcaaatcgaatcgcagattgaatccgctttccag
cgtgaagttcgtctgccttccggcggctcaattgttattgactccaccgaagcgctgacc
gcgattgatatcaactccgcacgggcaacgcgtggtggggatatcgaagagaccgccttc
aacaccaaccttgaagcggccgatgaaattgcccgtcagctgcgcctgcgcgacctcggc
ggcctgattgttatcgactttatcgatatgacgccggtacgccaccagcgcgcggtagaa
aatcgtctgcgtgaagcggttcgtcaggatcgtgcacgtattcagatcagccatatctcc
cgttttggtctgctggagatgtcccgtcagcgcctgagcccttctcttggcgagtccagc
catcacgtctgcccacgctgtagcggtaccggcaccatccgtgataacgagtcgctcgcc
ctctctattttgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagtgcac
gctatcgttccggtgcaggtcgcctcttacctgctgaatgagaagcgtgaagcggtaagc
gcaattgaaaaacgccagggcggcgtgcgggccatcatcgtgccaaacgatcagatgcag
accccgcactactcggtgctgcgcgtgcgcagcggcgaagagacacagacgctaagctac
catctgccgaagctgcatgaagcggaaatggcgctgccttctgaagaagagcacgccgag
cgcaaacgccctgagcaacccgctctggccgcgtttgtgatgcctgatgcaccgccagcg
ccgcaggaaactgccgctgttgccgctcctgctgaagctgctgcgcctacaactgctgct
cctgcacaggcgccggctgctacagaatctggcctgatgggccgcttcctgcgtggtctg
aagaaaatgtttgccggtgaagagaagccagcagaacagcctcagcctgcggtagtggaa
gaaaaagcgccggaagaagcggctgcacctcgtggcgagcgtcgcaataaccgtcgtcag
aataaccgtcgcgaccgtaacaacggcgaacgtggcgaacgctatggcgatcgcagcgag
cgtagtgaccgtaacggcgaacgcaacgaccgtaacggcgagcgtaatgagcgtaacggt
gaacgcaacgagcgtaacggtgaacgtaatgaccgtaacggcgaacgcaacgaccgcggc
gcggaacgtggcgatcgtcaggagcgcggcgagcgcaatgaccgtaacccgcgtaacgat
cgcaacgcaaaccgtaatgagcgcatgactcgcgaccgcgatcctgctgcggaaagccgt
gaagaaaaccgtcgtaataagcgtgctaaccctgctacccctgaagcacaggatgagctg
cagcccgttgctgaagagatccagcagcagccgcgtcgtgagcgtcagccacgtcgtcgt
caggatgaaaagcgccagcctgctcaggatgaaaacgttgttgatatcgcgccagctgtt
gttgaagaagcgatggagagcgatgagcatgtgcaggtgatgccgcgtcgtaagccacgc
cagctcaaccagaaagtgcgtatcgagacggctgagcaaacggctgcccgctctttcgcg
ccggaagaagagaccgcgccggttcagcaacacgctgttgaattgccgaccgccgatagc
cacagcgaagcagatgaaagcgaagatcgtgacagcaacagcatgccacgccgctcacgt
cgttcaccacgccatctgcgcgttagcggacaacgccgtcgtcgctaccgtgatgagcgc
taccctaaccagtcgccgatgccgctgacctttgcggctgcctcgccggaaatggcctca
ggtaaagtgtggatcacttatccggttgcccaggcaacggatgaacatgagcatgagcaa
tctgtagtgcctgagtatggtcatcaggatacggctgatgcggttgccgttgcggcggct
gcctcctctgccgaggttgcggatgaagcccaaccggttcaccacgccgaaccacagccg
gaaaacagcccggaagtgacggtggtcaataccgatgagacggctgccatcgagacgccg
gtcaatgaagagcctgctgtggtctctgctgccgatgagcctgtcgccgatgcggttgct
cagcaagcggtgccagcgaaagagactcagcctgctgtagaagcggttaatgaagttgaa
gagatcgtggcgcaagctaaacaggcagacgacaagcgcatggcagaagaggcgagccat
caggctgctgaagctgctgctgacgtcagcccctcaacggaacagcaggtagaagaagtt
ctctctgcacccgttgcggtagccgaacctgtggtgacttccgagccgcatgcacccgtt
ccagcacgtgatgagcctgtgatagcgccagcacccgctgctcagcctgctgcaacggaa
gctacaccagcgcctgctgccactgaagctgcatcagctccggctgttcagcctgctgcc
actgaagctgcaccagccccggttgctcagcttgctgccactgaagctgcaccagctccg
gttgctcagcctgctgtcactgaagctgcgccagcacctgttgctcagcctgctgcaacg
gaagctgcacctgcaccggttactcagcctgctgtaactgaagctgcgccagcgccggtt
gctcagcctgctgtaactgaagctacgcctgcaccggttgctcagcctgctgtcactgaa
gctgcgccagcgcctgttgctcagcctgctgtcactgaagctgcgccaacgcctgttgct
caacagcctgctgcaccggaagctgcacctgctgccgcttctcacgctgagccgctctat
aagcatcacgccacggccccaatgaccaaagcgcctgcaccggcttaccagccagaacca
gcacgccacagtgattgggtacgtcctgccttcaactttgaaggtcagggctccgcaggc
ggtcacgctgctacccatcaggcaactgctccggctacccgcccggagtaa
DBGET
integrated database retrieval system
