Edaphobacter paludis: P4G45_04140
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Entry
P4G45_04140 CDS
T10404
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
epl Edaphobacter paludis
Brite
KEGG Orthology (KO) [BR:
epl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
epl03032
]
P4G45_04140 (topA)
03400 DNA repair and recombination proteins [BR:
epl03400
]
P4G45_04140 (topA)
Enzymes [BR:
epl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
P4G45_04140 (topA)
DNA replication proteins [BR:
epl03032
]
Prokaryotic type
DNA Topoisomerases
P4G45_04140 (topA)
DNA repair and recombination proteins [BR:
epl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
P4G45_04140 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Dala_Dala_lig_C
Motif
Other DBs
NCBI-ProteinID:
XBH10921
UniProt:
A0AAU7D995
LinkDB
All DBs
Position
1026930..1029749
Genome browser
AA seq
939 aa
AA seq
DB search
MAKSLVIVESPAKAKTINKYLGSDYVVEASIGHIMDLPKNDIGVELKNRTFEPTLIVSPG
KEKVVERLKKLAAKSDMVYLAPDPDREGEAIAAHLSMQLLPVMKDRTKIRRVTFNEITQK
AVKAAFAHARDVDENLVDAQQTRRVLDRLVGYQVSPLLWDKVRRGLSAGRVQTVALRLIV
ERELEINNFEPVEYWTIHATLKPSPDGQEFIARFVGIDGVAARVANGTDETGKELFIASS
LPTKQRIDDVVAQLEKASWSVRSVERKERKRNPTAPFTTSKLQQDASSRLGFNVRRTMGV
AQRLYEGVEIGKEGTVGLITYMRTDSTRVSPDAIVEAREYVQKNLGAQYLPAKPNEYKSK
KDAQDAHEAIRPTNVAFTPEAIRKNLSEEQYKLYKLIWQRFVASQMVPAVFDQTTVDIAA
KADKTYDFRVSGSVMKFDGFLKVYEQVAEKKDEDEGLDTKLPALNDGQALTKQKVDSEQK
FTEPPPRYNEASLVKVLEERGIGRPSTYASIINTIQDRDYVKKIGAKFVPTEIGTVVTGL
LVKNFPYIFDTQYTATLEGELDAVEEGEERWTDLLTGFYDHFEKELKVASTQMEDVKRME
QATTEVCDKCDSPLILKWGKFGSFFSCSNFTKVKPMTVALGPWKKDAKAVTKKVMAAFEF
PMIVKATTEDVIEYSKEVDDAKELAASINAAAEQGKKITVEPVSCDFTKENFAAKPDLSA
PGADDVPEEEFCDNCGRVMVLRNGPWGPFMACPGYNEDPPCKTIRKLTQKVQQKPPVQLE
EMCPKCGKPLLLRNGQYGEFISCSGYPKCKYIKQELLDVPCPKCGGDIAVRKTKRGDTFY
GCVKYPKCDFASNLKLVNQACPKGDSPYLLEVANDKGTYLVCPNNREALPKRRKKKGAPE
EESTTPECSYEKKIGGPAPTPVAEKPDPEKTRPVIESVA
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggctaaatcacttgtgatcgtcgaatcgccggcgaaggcgaagacgatcaataaatat
ctgggcagcgactacgtggtggaggcctcgattggccacatcatggacctgccgaagaac
gacattggcgttgagctgaagaatcggacgtttgaaccgacgctgattgtgtctccgggc
aaggaaaaggttgtagagcggctgaagaagctggcggcgaagtcggacatggtctacctt
gctcccgacccggaccgcgagggcgaggcaattgccgcgcatctatcgatgcagcttcta
ccggtgatgaaggacaggacgaagatcaggcgcgtcactttcaacgagatcacgcaaaag
gccgtgaaggctgcgtttgcccatgcccgcgatgttgatgagaacctggtggacgcgcaa
cagacacggcgcgtactcgatcgattagtgggatatcaggtttcgccattgctgtgggac
aaggtgcgccgcggactgagcgcgggacgggtgcagacggtggctctgcggttgatcgtg
gagcgcgaactggagattaacaactttgagccggtcgagtactggacgatccatgcaacg
ctgaagccgagcccggacggacaggagtttatcgcgcgctttgtcgggatagatggcgtt
gcggcgcgggttgcgaacggcacggatgagactgggaaagaattgttcatcgccagttcg
ttgccgacgaagcagcgcatcgatgatgtcgttgcccagcttgagaaggccagttggtcc
gtgcgttcggtcgagcgcaaggagcgcaagcggaatcccacagctccatttactaccagc
aagttgcagcaggacgcttcgagccgactgggcttcaatgttcggcgaacgatgggtgtg
gcccagcgtttgtatgaaggcgttgagatcggtaaggaaggtacggtcggtctgattacg
tacatgcgtaccgattcgacccgcgtctctccggatgcgattgtcgaagctcgtgagtac
gttcagaagaatcttggcgcgcagtatctgcctgcaaagccgaacgagtacaagagcaag
aaggatgcgcaggacgcgcacgaggcgattcggccaacgaacgttgcgtttactccggag
gcgattcgcaagaacctgagtgaggagcagtacaagctctacaagctgatctggcagcgc
ttcgtcgcttcacagatggtgccggcggtgttcgatcagacgaccgtcgatatcgctgcg
aaggcagacaagacctacgacttccgcgtgtcgggatcggtgatgaagttcgatggcttc
ctcaaggtctatgagcaggtcgcggagaagaaagacgaagacgagggactcgacaccaag
ctgccagcgttgaacgatgggcaggcattgacgaagcagaaggtcgattcggagcagaag
tttaccgagcctccgccgcgctataacgaggcttcgctggtcaaggttctggaagaacgc
ggcattgggcgtccttcgacctacgcgtccatcattaatacaattcaggaccgcgactat
gtgaagaagattggcgcgaagtttgtgccgacggagattggcacggtcgttaccgggttg
ctggtgaagaactttccttacatcttcgacacgcagtacacagcgacgctcgaaggtgaa
ctggatgcagtggaagaaggcgaggagcggtggaccgatctgctgactggcttctacgac
cacttcgagaaggagctgaaggtcgccagtacgcagatggaagacgtcaagcggatggag
caggcgaccaccgaagtctgcgataaatgcgacagcccgctgattctgaagtggggtaag
tttggcagcttcttctcgtgcagcaacttcaccaaggtgaagccgatgaccgtggcgctg
ggcccgtggaagaaggacgcgaaggcagtcacgaagaaggtgatggctgcattcgagttt
cccatgatcgtgaaggcgaccacggaagatgtgatcgagtattcgaaagaggttgacgac
gcgaaagagttggcagcttcgatcaatgcggcggcggagcagggcaagaagataaccgtc
gagccagtgagctgcgactttaccaaggaaaacttcgccgccaagccggacctcagcgcg
ccgggggcggacgatgttcccgaagaagagttctgcgacaactgcggtcgagtgatggtg
ctgcgcaatgggccgtgggggccgttcatggcttgccccggatacaacgaggacccgcct
tgcaagacgattcgcaaactgacgcagaaggtgcagcagaagccgcctgtccagttggaa
gagatgtgcccgaagtgcggcaagccgcttttgttgcggaatgggcagtatggcgaattc
atcagttgcagcggatatccgaagtgcaagtacatcaaacaggagctgctcgatgtgccg
tgcccgaagtgcggtggcgacattgccgtccgcaagaccaagcggggagatacgttttac
ggttgcgtgaaatacccgaagtgtgactttgcttcgaatctgaagctggtaaatcaggct
tgccccaagggagatagcccctatcttctggaggttgcgaacgacaagggtacgtatctg
gtgtgcccaaacaatcgcgaggcgctgccgaagagacgaaagaaaaagggcgctccggaa
gaggaatccactaccccggagtgcagctatgagaagaagattggcggccctgctccaact
ccggttgcggagaagccggaccccgagaagacccgtcctgtgattgagagtgttgcatag
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