Edaphobacter paludis: P4G45_06170
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Entry
P4G45_06170 CDS
T10404
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
epl Edaphobacter paludis
Brite
KEGG Orthology (KO) [BR:
epl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
epl03016
]
P4G45_06170
Enzymes [BR:
epl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
P4G45_06170
Transfer RNA biogenesis [BR:
epl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
P4G45_06170
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
S1
Motif
Other DBs
NCBI-ProteinID:
XBH11306
UniProt:
A0AAU7D1S6
LinkDB
All DBs
Position
1492465..1493928
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AA seq
487 aa
AA seq
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MSTHTFDLAASASAEMIREGFQPDFPSGSEQQVEDIRADGHAARSKANVHDLRLLLWSSI
DNDTSRDLDQIEVAERVDVGIRVRVGIADVSASVLKDTPIDEYAAEQTQTVYTAVRNFPM
LPKELSTDLTSLNENEDRAALVVEFVVDMQGAVGKTKIYLAAVRNKAQLEYSKVGPWLEG
TGTGDPKVAASTDLQAQLKLQDEAAIALRAERVRQGALEFNRSEADPVVINGKVHEILTA
EPNRATDLIEEFMIAVNGTMARTLREGHRSCIRRVVRSPKRWDRIVELAGRNGTQLPSQP
DSGALNAFLKEKRTSDPVHYLDLALAVVKLMGPGEYVLTRSDETDPPGHFGLAAQDYAHS
TAPNRRFADLVTQRVVKAMLDDEPPPYTDDELAGIAQRCNLQEAAARKVERAMEKRVAAV
ALAGSIGQTFHGVITGSGDKGVYVRVFHPPVEGKVIRGEQGLDVGDTVDVTLLYTDPQHA
FIDFGRA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacacacttttgatcttgcagcatctgcgtcggcggagatgatccgcgaggga
tttcagccggactttccatcaggaagtgagcaacaggtcgaagatattcgcgccgatggc
catgcagcgcggtctaaagccaatgtccacgatctgcgcctgctgctttggtcctcgatc
gacaacgacacttcgcgcgacctcgatcagattgaggtcgccgaacgggttgacgtcggc
attcgcgttcgggtgggtatcgcggatgtgtccgcttcggtgctcaaggatacgccgatt
gacgaatatgcggcggagcagacgcagaccgtctacacggccgtgcggaactttcccatg
ctgccgaaagagctctccaccgacctgacttcgttaaacgaaaatgaagatcgcgcggcg
ttggtggtggagtttgttgtggatatgcagggcgcagtggggaagaccaagatctatctc
gcggcagtgcgcaacaaggcacagcttgagtacagcaaggttggcccgtggcttgaggga
acgggaacaggtgatccgaaggttgcggcgtcaactgatttacaggcccagttgaaactg
caagatgaggcggcaattgcactgcgtgcagagcgcgtgcgacagggagcgctcgaattc
aatcggagtgaggctgatccggtggtgattaatgggaaggtgcatgagattctgaccgcc
gagcctaaccgagcgacagacctgattgaagagttcatgattgcggtgaatggaacgatg
gcacggacattgcgcgaggggcatcgctcgtgcattcgccgcgtggttcgctctccaaaa
cggtgggaccgcattgtggagctggcgggacgaaatggaacgcaactgccgtcgcagcct
gactccggcgcgctgaatgcttttctgaaggagaagcggacaagcgatccggttcattat
ctggatctcgctttggcagttgtgaagctgatggggccgggcgaatatgtattgacccgc
agcgatgaaacggacccgccggggcactttgggctggcggcgcaggattatgcgcattcg
accgctccgaaccggcgatttgccgaccttgtgacgcagcgcgtggtgaaggcgatgctc
gatgacgagcctcccccatatacggacgatgaactagctgggattgcgcagcggtgcaat
ctgcaggaggcggcggcgcgcaaggtcgagcgggcgatggagaagcgagtggcggcagtg
gcgttggccggcagcattggccagaccttccacggcgttatcaccggctcgggcgacaag
ggagtttatgttcgcgtctttcatccaccggtcgaaggcaaggtgattcgcggagagcag
ggactggacgttggcgacaccgtcgacgtgacgttgctctataccgacccgcagcatgca
tttattgattttgggcgcgcctga
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