Edaphobacter paludis: P4G45_13790
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Entry
P4G45_13790 CDS
T10404
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
epl Edaphobacter paludis
Pathway
epl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
epl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P4G45_13790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
epl03019
]
P4G45_13790
Enzymes [BR:
epl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P4G45_13790
Messenger RNA biogenesis [BR:
epl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P4G45_13790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
XBH09548
UniProt:
A0AAU7CVN3
LinkDB
All DBs
Position
complement(3305048..3306565)
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AA seq
505 aa
AA seq
DB search
MTTATLEVQELTQAEPRVIANSTSVSLDSNNVCFTDFNISDSLKNRLTTAGFTTPTPVQA
KAIPPALEGADILATASTGTGKTLSFLIPMIERMDANSVPSTRGKRGPIRALILLPTREL
AMQVLEAYWKLVPGSKNDAVLVCGGLSENNQLDQLDRGPRLVVATPGRLEDFLRRREINI
NAVEMLVLDEVDRMLDMGFLPAIRRIVGAVPKTRQTMCYSATLDANIREIVRDYVNKPVR
IEIGQTSKPSDRVELRVYTVMQEQKLGLLDQMLREEEGTFLVFSRTKHGADRISKKLERL
GHDADVIHGDRSQSQRSAALKGFQNGKHRVLVATDVAARGIDVNDIAHVINYDLPNASED
FVHRIGRTGRAGKKGVATTFVMPQEKHDARKLERELKIKFEWREADKNLEKELRNQPLDT
TTQGQNLMQLETRTWRGNDPVAPMAANPSPYKAAKGSGSGFRSRAKSGGGGFSGGRSAGG
RGPGANGRSSSRPGSSRSGPARRGQ
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
ttgactaccgcaactcttgaagtacaagaacttacacaggctgaacctcgcgtcatcgcc
aactccacgtcggtttctctcgattcgaacaacgtctgttttaccgacttcaacatctcg
gactcgctgaagaatcgcctgaccaccgccggatttacgactccgacgccggttcaggcc
aaagccattccgcctgcacttgaaggcgccgatattctcgctaccgcctccaccggtact
ggcaagacgctcagcttcctcatcccgatgatcgagcgcatggacgcgaactctgtgcca
agcacacgtggcaaacggggcccgattcgcgcgctgattttacttcccacccgtgaactt
gcgatgcaggtgctcgaggcatattggaagctcgttcccggctcgaagaacgatgctgtg
ctcgtctgcggcggactgtcggagaacaaccaactcgaccagctcgaccgcggcccgcgc
ctcgtcgttgccactccgggacggctcgaagacttcctccgccgccgcgagatcaacatc
aatgcagttgagatgcttgtgctcgacgaagtggaccgcatgttggatatgggctttctg
cccgccatccgccgcatcgtcggcgcagtgccgaagacccggcagacgatgtgctattcg
gcgacgctcgatgccaatatccgcgagatcgttcgcgactacgtcaacaagccagtccgc
atcgagatcggacagacctcgaagccttctgatcgcgtggagcttcgcgtctacaccgtc
atgcaggaacaaaagctcggcctgctcgaccagatgctgcgggaagaggaggggacgttt
ctcgtcttctcccgcaccaagcatggcgccgaccgcatctcgaagaagctcgaaaggctt
ggccacgatgccgacgtaattcatggcgaccgcagccagtcgcagcgtagcgcagctctc
aaaggcttccaaaatggcaagcatcgcgttctcgtcgccactgacgttgcagcacgcggc
atcgatgtcaacgacattgcgcacgtcatcaactacgacctgccgaatgcctccgaggac
ttcgttcaccgcatcggccgtaccggccgcgccggcaagaagggcgtggcgaccaccttc
gtcatgccccaggagaagcacgacgcccgcaagctcgagcgcgaactgaagatcaagttc
gagtggcgcgaagccgataagaaccttgagaaggaactgcgcaatcaaccccttgacaca
acaactcagggacagaatctgatgcagctcgagactcgcacctggcgcggcaacgatcct
gttgctcccatggccgcgaaccccagcccctacaaggcggcaaagggaagcggcagtggc
ttccgcagccgcgccaagagcggtggcggcggattctccggtggacgaagcgccggtgga
cgtggtcccggtgcaaacggccgctcaagcagccgcccaggtagcagccgctccggccca
gcccgccgcggtcaataa
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