Endomicrobium proavitum: Epro_0668
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Entry
Epro_0668 CDS
T03965
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
epo
Endomicrobium proavitum
Pathway
epo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
epo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Epro_0668 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
epo03021
]
Epro_0668 (rho)
03019 Messenger RNA biogenesis [BR:
epo03019
]
Epro_0668 (rho)
Transcription machinery [BR:
epo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Epro_0668 (rho)
Messenger RNA biogenesis [BR:
epo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Epro_0668 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
NACHT
AAA_22
AAA_25
ATPase_2
ResIII
PIF1
Motif
Other DBs
NCBI-ProteinID:
AKL98047
UniProt:
A0A0G3WJK9
LinkDB
All DBs
Position
complement(823147..824421)
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AA seq
424 aa
AA seq
DB search
MEKEKSMDITVLSKRTMSDLTKLAKDLKLDSVAGLRKQELIAKILEAQTKENNLVYDEGV
LEILPDGFGFLRSPDYNYLPGPDDIYISPSQIKKFALRKGDTVAGYVRPPKEQERFFALL
QVKSVNGQEKLENIRERPLFDNLTPLYPNKKIVLETTQREVSTRIIDMLVPIGKGQRVLI
NAQPRTGKTVLLQKIANAITENNPDIVLMVLLIDERPEEVTDMQRSVKGEVVSSTFDEPS
DRHIQVAEMVIEKAKRIVENGKDVVVLLDSITRLARAYNTAIPSSGRVLSGGLDSNALQR
PKRFFGAARNIEEGGSLTIIGTALVETGSRMDDVIFEEFKGTGNCEIYLDRKLADRRVFP
AIDLLRSGTRKEELLLSDDEKNKMWILRKWMNSMNSIEVMEELSKRLLTSKSNKDFLKQM
ELGV
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaaaaatccatggacattaccgttttgtcaaaacgcaccatgtcggatttg
acaaaacttgcaaaagatttaaagcttgactccgtagcgggcttaagaaaacaggagctt
attgcaaaaattcttgaagcccagacaaaagaaaataatcttgtttacgacgaaggcgtt
ttggaaattcttcccgacggcttcggttttttacgttcgcccgattacaactatttgccg
ggtccggacgatatttatatttctccgtcgcaaattaaaaaatttgctttaagaaaaggc
gataccgtagccggttacgttcgccctcccaaggagcaggaaagatttttcgccttgctt
caggttaaatccgtaaacggacaggaaaaacttgaaaatatcagagagcgtccgcttttt
gacaatttaacgcctctgtatcctaataaaaaaatagttttggaaactacgcagagagaa
gtgtcaacaagaattatagatatgcttgtgcctataggtaaagggcaaagagttttaata
aacgcccagccccgcacgggaaaaacggttttgcttcaaaaaattgcaaacgcaataacg
gaaaataatccggatatagttttaatggttcttttaattgacgagcgccccgaagaagtt
accgacatgcagcgttcggtaaaaggagaagttgtttcttctacttttgacgaaccgtcg
gacagacatattcaggttgccgaaatggttatagaaaaagctaaaagaattgttgaaaac
ggcaaagatgtcgttgtgcttttagattcaataacaaggctcgcaagagcttacaacact
gcaataccgtcaagcggcagagttttgtcgggcggtttagattcaaacgcgcttcaaaga
cctaaaagatttttcggcgccgcaagaaatattgaagaaggcggcagccttacaattatc
ggcaccgcgcttgttgaaaccggcagccgcatggacgacgtaatatttgaagagtttaag
ggaaccggcaactgcgaaatttaccttgacagaaaacttgcggacagaagagttttcccc
gccatagatttactgcgttcgggcaccagaaaagaagaacttctcttaagcgacgacgaa
aagaacaaaatgtggattttaagaaaatggatgaactctatgaactccatagaagttatg
gaagagctctcaaaacgcctgcttacttcaaaatccaacaaagattttctcaagcagatg
gagttaggggtataa
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