Endomicrobium proavitum: Epro_0785
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Entry
Epro_0785 CDS
T03965
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
epo
Endomicrobium proavitum
Brite
KEGG Orthology (KO) [BR:
epo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Epro_0785 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
epo03021
]
Epro_0785 (rpoD)
Transcription machinery [BR:
epo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Epro_0785 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r1_1
Sigma70_r2
Sigma70_r1_2
RHIP1
Death
DUF4298
Dcst2
REF2_N
SYN8_N
COG3_N
Motif
Other DBs
NCBI-ProteinID:
AKL98164
UniProt:
A0A0G3WKY6
LinkDB
All DBs
Position
complement(948151..949875)
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AA seq
574 aa
AA seq
DB search
MAKKDSFKDLIDIGKEQGYLTYDDINKTLPQKSVQAEKIDSFFVTLEDLGIKVVDNREYT
SAKSKKNSGEAVEQSVKVSSEDEDINPVRMYLSEMAKVPLLERSVEVELAKNIRENERKL
KLIVLESPLIIKEIRNWETLISQDEMTPKELMPRGRKSQAQLRGMGVKIKGAVQKINKIE
KSTISYEEKLHKKSLPQKDRIKYEGKVKELRSEIVTLIISLNLNQDKIKRLINKIKTIAQ
KLNEIQDDVRRFERKYKNPVSKVQSLFKNYESKKITAADFKKATGCPIKEAADHLESIRA
LLAKQANLKEGFVITPEEMIETDKKIRELEEVIHRDKMKLIEANFRLVVSIAKKHVGVSN
LELSDLIQEGNLGLSKAVEKFEWKRGFKFSTYATWWIRQSINRAIADQARTIRIPVHMKE
LISKLTKVKKKFQQDIGREPTIEEYSKSLRLSTDRIRRILKMMQEPVSLATPVGEEEDSR
LEDFIEDQHSPSPVAKTQQYRLQLELSKVLNTLTPREAEIISLRYGIGVGYPSTLEEVGK
KFGVTRERVRQIEAKAIRKLRHPTRSKSLREYLE
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaagattcatttaaagatctcattgatatcggaaaagagcaggggtattta
acttacgacgatatcaataaaactcttccgcaaaaatctgttcaagccgaaaaaattgac
agtttttttgtaacccttgaagatcttggaattaaagttgttgataacagagaatacacg
tccgcaaaaagcaagaaaaattccggcgaggctgtggagcagtccgttaaagtttcaagc
gaggacgaagacattaaccccgttagaatgtatttaagcgagatggcgaaagttcccctg
ttggagcgttccgtagaagttgaacttgcaaaaaatataagagaaaacgaaagaaagctt
aaacttatagttttagaatctccgcttattattaaagaaataagaaattgggaaacgctt
ataagccaagacgaaatgactcccaaagaacttatgccgcgcggacgcaaatctcaggcg
cagcttagaggcatgggcgtaaaaataaaaggcgccgttcagaaaataaataaaatagaa
aagagcacaatatcttacgaagagaaacttcataaaaaaagtttgccgcaaaaagacaga
ataaaatatgaaggcaaagttaaagaactgcgttcggaaattgtaacgcttattataagc
cttaatttaaatcaggataaaattaaaaggcttataaacaaaattaaaaccatagcgcaa
aaacttaacgaaattcaggacgatgtaagaagatttgaaagaaaatataaaaatcccgtt
tcaaaagttcagtcgctttttaaaaattacgaatctaaaaaaattacggcggcagatttt
aaaaaggctaccggctgtcctattaaagaagcggcggatcatttggaaagcattcgcgct
ttgcttgcaaaacaggctaacttaaaagaaggttttgtaattactcctgaagaaatgata
gaaacggacaaaaaaataagagagcttgaagaagtaattcacagagataaaatgaaactt
atagaggcaaatttccgccttgtggtttctatagcaaaaaaacacgtgggcgtaagcaac
cttgaactttccgatttaattcaggaaggaaatttaggcttgtcaaaagccgtggaaaaa
tttgaatggaaacgcggatttaaattttcaacgtatgcaacgtggtggataaggcagagc
attaaccgcgccattgcggatcaggcgcgcacaataagaattcccgtgcatatgaaagag
cttatttcaaagcttacaaaagttaaaaagaaatttcagcaggacataggcagagagcct
accatagaagaatattcaaaatctttaagactttccaccgacagaataagaagaatttta
aagatgatgcaggagccggtttcccttgcaacgcccgtcggcgaagaagaagattcaaga
cttgaagattttatagaagatcagcacagcccgagcccggttgctaaaacgcagcaatac
agacttcagcttgaactttcaaaagtgttaaatactctaacgcccagagaagccgaaatt
ataagtttaagatacggtataggcgtaggctatcccagcactcttgaagaggtaggcaaa
aaattcggcgtaaccagagaaagagtccgccagatagaagccaaagccatacggaaatta
cgccaccccacaagaagcaaatcgttaagagaatatttagagtag
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