Endomicrobium proavitum: Epro_1137
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Entry
Epro_1137 CDS
T03965
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
epo
Endomicrobium proavitum
Pathway
epo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
epo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Epro_1137 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
epo03019
]
Epro_1137 (cshA)
03009 Ribosome biogenesis [BR:
epo03009
]
Epro_1137 (cshA)
Enzymes [BR:
epo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Epro_1137 (cshA)
Messenger RNA biogenesis [BR:
epo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Epro_1137 (cshA)
Ribosome biogenesis [BR:
epo03009
]
Prokaryotic type
rRNA helicases
Epro_1137 (cshA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
CMS1
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AKL98516
UniProt:
A0A0G3WIQ0
LinkDB
All DBs
Position
1362800..1364563
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AA seq
587 aa
AA seq
DB search
MSLKENMTTLKFTELGLSHEILKAVEDLSFEEATPIQTLSIPKIMEGKDIIGQAQTGTGK
TAAFGIPALEKTDIKNKAVQTIILCPTRELAIQVCEELKLFSKYKRGVNIVPVYGGQPIG
RQMMALSKGAQIVVGTPGRVIDHIERKTLKLDAAKLVVLDEADEMLDMGFRDDIELILKN
LPQQHQTVFFSATMPKEFLFLTKKYQTQPETIKVVSEKLTVPLIEQYYFDIREHQKLEAL
TRCLDMYDPKLSLVFCNTKRKVDEVTSSLQARGYAADAIHGDMNQSQRDRVMAKFRSGAI
ELLIATDVAARGIDVDDIDMVFNYDVPKDDEDYVHRIGRTGRAGRTGKSYTFVSGKDIFK
LRDIQRYTKVNIKRTNVPSLADVENIKTTMLLEKVKSFLKEKDTEKYVGMAESLISDDVT
SLDVAAALLKMAVASEQKEQKEKADVFSAKKSEGYSKGYSNTGARDHGMTRLFINIGKKD
NVRAGDFVGAIAGEAGIRGDAVGNIKILEAFSFVEVPTENADDVINALNASNIKGKRVNA
EPAKESDSSGDRGDSRAKFNRYSKGSSSSYGNKKRSGSSYEDFAKRR
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaaaggaaaatatgacaacattaaaatttacagagctgggattatctcacgaa
atacttaaagcggttgaagatttaagttttgaagaagccacgcccattcaaactctttcc
attcctaaaattatggaaggcaaagacattatcgggcaggcgcaaaccggcaccggcaaa
accgcggcatttggtattcccgcgcttgaaaaaacggatataaaaaacaaagccgtgcaa
acaataattttgtgccccacaagagagcttgcaattcaggtttgcgaagagcttaaactt
ttttcaaaatataaacgcggcgtaaatatagtgcctgtttacggcggacagcccataggc
agacagatgatggctctttctaaaggcgcgcaaatagtagttggcactcccggcagagtt
atagaccacatagaaagaaaaacgttaaaacttgacgcggcaaaacttgtagttttggac
gaagccgacgaaatgttagacatgggtttcagagacgacatagagcttattttgaaaaat
cttccgcagcagcatcaaacggtttttttctccgccacaatgccgaaagaatttttattt
cttacaaaaaaatatcaaacgcagccggaaacaataaaagttgtcagcgaaaaacttacg
gtgcctttaatagaacaatattattttgacattcgcgaacaccaaaaacttgaagctctt
acaagatgccttgatatgtacgaccccaaactttcgcttgttttctgcaacacaaaaaga
aaagttgacgaagttacgtcgtcgttgcaggcaagaggctacgccgcggacgcaattcac
ggcgatatgaaccagtcgcaaagagacagagttatggcaaaattcagaagcggcgcaata
gagcttcttatagctaccgacgtagccgcgcgcggcatagacgttgacgatattgacatg
gttttcaattatgacgtgcctaaagacgatgaagattacgtccacagaataggcagaacc
ggaagagcgggcagaaccggcaaatcttacactttcgtttccggaaaagatatttttaaa
ctgcgcgatattcaacgctacacaaaagtaaatattaaaagaacaaacgttccgtcgctt
gccgacgtggaaaatataaaaaccacaatgcttcttgaaaaagttaaaagttttcttaaa
gaaaaagacaccgaaaaatatgtgggaatggcggagtctttaatttccgacgacgttact
tcgttagacgttgcggctgcgcttttaaaaatggcggttgcgtccgaacaaaaagaacag
aaagaaaaagcggacgtgttttccgccaaaaaaagcgaaggttatagcaaaggctattcc
aacaccggcgcaagagaccacggcatgacaagattgtttattaatatcggcaaaaaagat
aacgttcgcgccggagactttgttggcgcaatagcgggcgaagccggcataagaggcgac
gccgtgggaaacattaaaattttagaagcgttctcttttgttgaagtccctactgaaaat
gcagacgacgtaataaacgcattaaacgcaagcaatataaaaggcaaaagagtaaacgca
gaacccgccaaagaaagcgattcttccggcgaccgcggcgacagccgcgcaaagtttaac
agatattccaaaggttcctcatcaagctacggcaacaaaaaaagaagcggcagcagctac
gaagattttgcaaaaagaagatag
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