Erwinia pyrifoliae DSM 12163: EPYR_00380
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Entry
EPYR_00380 CDS
T02121
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
epr
Erwinia pyrifoliae DSM 12163
Pathway
epr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
epr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EPYR_00380 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
epr03019
]
EPYR_00380 (deaD)
03009 Ribosome biogenesis [BR:
epr03009
]
EPYR_00380 (deaD)
Enzymes [BR:
epr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EPYR_00380 (deaD)
Messenger RNA biogenesis [BR:
epr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EPYR_00380 (deaD)
Ribosome biogenesis [BR:
epr03009
]
Prokaryotic type
rRNA helicases
EPYR_00380 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAY72682
LinkDB
All DBs
Position
436791..438707
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AA seq
638 aa
AA seq
DB search
MTDIQTTFAELGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLHNIDPTVKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGRKTDALTRFLE
AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLEQYRALLSKMQPEDELDIETL
AAALLKMAQGERPLIVPADAPQRPRREFRDRDDRRDDRRGDRPDRGPREARGEARDGDRP
RRERRDVGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKG
MPGDVLQHFTRTRILNKPMNMQLIGDAQPRSNVGGGERRPGGPARGGFGAGAGREGGRGG
EAGGRRFSSERGGERRPAGNRGPRREEGGSAPARRRDA
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatccaaactactttcgctgaacttggcctgaacgccgacctccttgaatca
ctgaacggcatgggctacgtcaagccatccccaatccaggctgagtgtattcctcacctg
ctggcaggccgtgacgtgttaggtatggcgcagaccggaagtggcaaaactgcagccttc
tcgctgccactgttacataacattgaccctactgttaaagcgccgcaaattctggtgctg
gcaccaacccgcgaactggcggttcaggttgctgaagccgttacggacttttctaaacat
atgcgtggtctgaacgttgttgccctttacggcggccagcgttatgacgttcagctgcgc
gctctgcgccaggggccacaggttgttgtcggcaccccgggtcgcctgcttgaccacctg
aaacgcggcacgttagacctgtctaacctgcgcggtctggtgctggatgaagccgatgaa
atgctgcgtatgggctttatcgaagacgttgaaacgattatggcgcagatcccagacggt
caccagaccgcgctgttctctgccacaatgccagaggcgattcgccgtattactaaacgc
tttatgaaggatccgcaggaagtgcgtatccagtcaagccttaccacgcgcccggacatc
agccagagttactggacggcttacggccgtaaaacggatgcgctgacccgcttcctggaa
gcagaagactttgatgcagcgatcatctttgtgcgtaccaaaaatgccacgctggaagtt
gccgaagcgcttgagcgtaacggttataacagcgccgcgcttaacggtgacatgaaccag
gctctgcgtgagcagacgctggagcgtctgaaagatggccgtctggatattttgatcgcc
accgacgttgctgcccgtggtctggacgttgaacgtatcagcctggtggttaactacgac
atcccgatggatgcagaatcttacgtgcaccgtatcggtcgtaccggccgtgctggtcgt
gctggccgcgcactgctgttcgttgagaaccgtgagcgtcgcctgctgcgtaacattgaa
cgcaccatgaagctgaccattcctgaagtggagctgccaaacgcagaactgctgggtcag
cgtcgtctggctaagttcgccgcgaaagttcagcagcagctggaaagcagcgatctggaa
cagtaccgtgcgctgctgtctaagatgcagccggaagacgaactggatatcgaaactctg
gccgccgctctgctgaaaatggctcagggcgaacgtccactgatcgttcctgctgatgcg
ccgcagcgtccgcgtcgcgaattccgcgatcgtgatgaccgtcgtgacgatcgtcgcggt
gaccgtccggatcgtggcccacgcgaagcgcgtggcgaagcgcgcgatggcgaccgtcca
cgtcgtgaacgtcgtgacgttggcgatatggaagtgtaccgcattgaagtgggccgtgat
gatggtgttgaagttcgtcacatcgttggcgctatcgctaacgaaggcgatatcagcagc
cgttacatcggtaatatcaagctgtttggtactcactcaaccatcgaactgccaaaaggc
atgccgggcgatgtgctgcaacactttacccgcacgcgtattctcaacaagccgatgaat
atgcagctgattggtgatgcacagccacgtagcaacgtcggtggtggtgagcgccgccct
ggcggtcctgcgcgcggtggtttcggcgccggtgccggtcgtgaaggcggtcgcggtggt
gaagctggcggtcgtcgtttcagcagcgaacgcggcggtgagcgtcgtccagcgggcaac
cgtggtccacgtcgtgaagaaggcggtagcgcacccgcgcgtcgtcgtgatgcataa
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