Erwinia pyrifoliae DSM 12163: EPYR_01052
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Entry
EPYR_01052 CDS
T02121
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
epr
Erwinia pyrifoliae DSM 12163
Brite
KEGG Orthology (KO) [BR:
epr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
epr03009
]
EPYR_01052 (srmB)
Enzymes [BR:
epr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EPYR_01052 (srmB)
Ribosome biogenesis [BR:
epr03009
]
Prokaryotic type
rRNA helicases
EPYR_01052 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_11
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
CAY73432
LinkDB
All DBs
Position
complement(1138627..1139955)
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AA seq
442 aa
AA seq
DB search
MTVTTFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW
RKQTLLFSATLEGEAIKDFAERILNEPVEIEADPARRERKKIQQWYYRADDIKHKTALLL
HLLKQPEVTRAVVFVRKRERVHEVCGWLREAGINNSYLEGELVQAKRNEAIKRVVDGRVN
VLVATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHDNLLL
GKIIRYVKEPIKARVIDELRPTTRAPSEKLKGKPSKKVLAKRTEQKNKQKAEEKPRVKER
HRNRKNIGKRRQPASAKTDPAE
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccactttttccgaacttgaactagacgagagcctgctgcagtccctgcag
gagaaaggcttcacgcgccctacggctatccaggccgaggctatcccgccagcactggag
ggtcgtgacgttctgggttcggcaccaaccggtacaggcaagactgcggcctatctgctg
cccgcactgcaacatttgctcgatttcccgcgtaagaagtcaggtccgccgcgcattctg
atcctgaccccaacccgtgaactggctatgcaggtcgccgaccaggcacgcgagctggca
aaacacacccacctggatattgccaccatcaccggcggcgtggcctttatgaaccacgct
gaggtgttcagcgaaaaccaggacgtggtcgttgccaccaccggacgtctgctgcagtac
atcaaggaagaaaacttcgattgtcgcgccgtcgaaacgctgatcctggatgaagccgac
cggatgctggatatgggctttgctcaggatatcgaaaccatctcggctgaaacccgctgg
cgcaaacagacgctgctgttctccgccacgctggaaggcgaagctatcaaagatttcgcc
gagcgtattctcaatgagccggttgaaatagaagccgatccggcgcggcgcgaacgcaaa
aaaatccagcagtggtattaccgtgcggatgacatcaaacacaaaaccgcgctgttactg
catctgctgaaacagccggaagtgacgcgtgcagtggtgtttgtgcgtaagcgtgagcgc
gtgcatgaagtctgtggctggctgcgtgaagcaggcattaacaacagctatctcgaaggg
gaactggtacaggccaaacgtaacgaggcgattaagcgcgtggttgacggccgggtgaac
gtgctggtagccaccgatatcgccgcacgcggcatcgacatcgatgatgtcagccatgtg
attaacttcgatatgccggtcacctccgatacctacctgcaccgcatcggccgcaccggg
cgcgctggtaaaaaaggcatcgccatctcgttggtggaagcgcatgacaatttgctgctg
ggtaaaatcatccgctacgttaaagagccgataaaagcgcgcgtcattgatgaactgcgc
ccgaccacgcgtgcgcccagcgaaaagctgaaaggtaagccatcgaagaaagtgctggct
aaacgcacagaacagaaaaataaacaaaaagcagaagagaaaccacgcgtgaaagagcgc
catcgcaacagaaaaaacattggtaaacgccgtcagcctgccagcgctaaaacggaccca
gctgaatag
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