Erwinia pyrifoliae DSM 12163: EPYR_02320
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Entry
EPYR_02320 CDS
T02121
Symbol
rne
Name
(GenBank) ribonuclease, Rne/Rng family protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
epr
Erwinia pyrifoliae DSM 12163
Pathway
epr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
epr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EPYR_02320 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
epr03019
]
EPYR_02320 (rne)
03009 Ribosome biogenesis [BR:
epr03009
]
EPYR_02320 (rne)
Enzymes [BR:
epr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EPYR_02320 (rne)
Messenger RNA biogenesis [BR:
epr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EPYR_02320 (rne)
Ribosome biogenesis [BR:
epr03009
]
Prokaryotic type
rRNA processing factors
EPYR_02320 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CAY74700
LinkDB
All DBs
Position
2395897..2399760
Genome browser
AA seq
1287 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSHYHAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLGFRIKHWEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQIGHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDNMQ
TPHYSVLRVRSGEETQTLSYHLPKLHEAEMALPSEEEHAERKSPEQPALAAFVMPDAPPA
LQEAVAEPAAPKAAVKTPAPASAQPGLVSRIVSSLKKLFAAPEKPAEQPQPPVAEEKSAE
ASAPRGERRNHRRQNNRRDRNGDRNERNDRSGERNDRSAERNERSAAQSERAPRERNNEA
REGREDRRNNQRRNPQQTDARSERMVPDEFERSETTQPRQPRQDRQRRRSGQNQEEKRSL
VQEEKIPEPVVENVPAPEVLEESVQVMPRRKQRQLNQKVRIETAEQTAARSFAPQESEPA
VPAVPAVTQPVVETEDHDDRDGNSIPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLA
HAAASPESASGKVWISYPVAQVSDHETHEEHPHSVVPAYGHADIAQRDALDTAATVAMHA
SVTESVAAPAVEPAPAVEPAPAVEPAPAVEPAPAVEAAPAVEAAPAVEAAPAVEAAPAVE
PAPAVQPAPAVQPAPAVQPAPAVQPAPAVQPAPAVXPAPAVQPAPAVQPAPAVQPAPAVX
PAPAVQPAPAVQPAPAVEXAPAVKAAPAVEXAPAVQPAPAVQPAPAVQPAPAVKAAPAVE
AAPAVEAAPAVEQAEAVQVVEAASVHLPEITPVTAEDTAAIDAPVNQQPAVISAVDEAVA
AETAAEAVPAEEVKPEPADAVTDKSVDVSAQQAAASRVAPVEVSTEVEQQVARVLNAADA
SAQQPSAAAEPHAPVPVRDEPVDAATVQAGRYKHHATAPMTKAPAPAYQPEPARRSDWVR
PAFNFEGKGAAGAHAASHQATAPATRP
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgataaacgcgactcagcaagaagagttgcgtgttgcccttgtcgat
ggacagcgcctgtacgacctggatattgaaagcccgggacacgaacagaaaaaagccaac
atctataaaggcaagatcacccgtattgaacccagtcttgaagccgcatttgttgattat
ggcgccgaaaggcatggtttcctgcctctgaaagaaatatcccgcgaatacttcccttct
cattaccatgctcacggccgtcctaatatcaaagatgtgctgcgtgaaggccaggaagtg
attgttcagattgataaagaagagcgtggcaataaaggcgccgctctgaccacctttatc
agtctggcgggcagttatctggtattgatgccgaataacccgcgtgctggcggcatttcg
cgccgcattgagggtgatgaccgtactgaactgaaagaagcgctctcttcgcttgagcta
cccgacggcatgggcctgattgtgcgcactgcaggcgtgggcaaatccgccgaagcctta
cagtgggatttaggtttccgcatcaagcattgggaagcgatcaagaaagccgctgacagc
cgcccggctccgttcctgatccatcaggaaagcaatgtcatcgtacgtgccttccgcgac
tatctgcgccaggacattggcgaaatcctgattgataacccgaaagtgctggagctggca
cgccagcatatcgccgcactgggacgtccggatttcagcagcaaaatcaagctttatacc
ggtgaaataccgctgttcagccattaccagatcgaatcgcagattgaatccgccttccag
cgtgaagtgcgcctgccatcaggcggctcgattgttattgataccaccgaagcgctgacc
gccatcgatatcaactccgctcgcgccacccggggcggtgacatcgaagagacagctttt
aacaccaaccttgaagctgccgacgagattgcccgccagctgcgtctgcgtgacctcggt
ggcctgatcgtcatcgactttatcgacatgaccccggttcgccatcagcgtgcggttgaa
aatcgcctgcgcgaagcggtacgccaggatcgtgcgcgtatccagatcggccatatttcc
cgtttcggcctgctggaaatgtcacgtcaacgtctcagtccgtcactgggtgagtccagc
catcacgtatgcccgcgctgtagcggcaccggcactattcgtgataatgaatcgctggcg
ctctctattctgcgcctgattgaagaagaagcgctgaaagagaataccaaagaagtccac
gccatcgtgccggtacaggtggcctcctacctgctgaacgagaagcgtgatgcggtaagc
gccattgagaaacgccagggcggcgtacgtgccattatcgtaccaaacgataacatgcag
actccgcactattcggtactgcgcgttcgcagtggcgaagaaacccagaccttaagctat
catctgccgaaactgcatgaagctgaaatggcgctgccttctgaagaagaacatgccgag
cgcaaaagcccggagcagcctgccctcgccgcttttgtgatgccagatgcgccaccggca
ctgcaggaagccgttgctgaacccgccgcgccaaaggccgctgttaaaaccccagcccct
gcttcagcccagccgggtctggttagccgcatcgttagcagcctgaaaaaactgtttgct
gcgccagagaagccagcggaacagccacagccgccggtggctgaagagaaaagcgctgaa
gcatcggctccgcgcggcgagcgtcgtaaccatcgccgccagaataaccgtcgtgaccgt
aacggcgatcgcaacgagcgtaatgatcgcagcggtgaacgcaacgatcgcagcgcagag
cgtaacgaacgcagcgcagcgcagagcgaacgcgcaccgcgtgagcgtaataacgaagcc
cgcgaaggtcgtgaagaccgccgtaataatcaacgtcgcaatcctcagcagaccgatgca
cgtagtgagcgtatggtgccggacgagtttgagcgcagtgaaaccactcagccgcgccag
ccacgtcaggatcgccagcgtcggcgttctggtcaaaaccaggaagaaaaacgttctctg
gtgcaggaagagaagatccctgagccggtagtcgaaaacgtgccggctccagaagttctg
gaggagagcgtacaggtgatgccgcgccgtaaacagcgccagctaaaccagaaagtgcgt
atcgaaaccgctgaacagactgcagcccgttcgttcgcgccacaagagagtgaaccggct
gtgccggctgttccagccgttacccagcccgtggtggaaacggaagatcacgacgatcgc
gatggcaacagtatccctcgccgctctcgccgctctccgcgccacctgcgggttagcggt
cagcgccgccgtcgctaccgtgacgagcgctatccaacacagtcaccaatgccgctggct
cacgccgccgcatcgccagaatcggcgtcaggtaaagtgtggatctcctatccggtagcc
caggtgagcgaccatgaaacccatgaagagcatccacattctgtggtgcctgcctacggt
catgcagatatcgcccagcgggatgcgctggacacggcggcaaccgttgcaatgcacgcc
agcgtgacggaaagcgttgcagctccggcggttgaaccagctccggcggttgaaccagct
ccggcggttgaaccagcnccggcggttgaaccagctccggcggttgaagcagctccggcg
gttgaagcagctccggcggttgaagcagctccggcggttgaagcagctccggcggttgaa
ccagctccggcggttcaaccagctccggcggttcaaccagcnccggcggttcaaccagct
ccggcggttcaaccagctccggcggttcaaccagccccggcggttnaaccagctccggcg
gttcaaccagctccggcggttcaaccagctccggcggttcaaccagccccggcggttnaa
ccagctccggcggttcaaccagctccggcggttcaaccagccccggcggttgaancagct
ccggcggttaaagcagccccggcggttgaancagctccggcggttcaaccagctccggcg
gttcaaccagctccggcggttcaaccagcnccggcggttaaagcagccccggcggttgaa
gcagctccggcggttgaagcagctccggcggttgaacaggctgaagctgtacaggttgtt
gaagcagcgtcagtccatctgcctgagatcaccccggtaacggccgaagacactgcggct
attgatgcaccggtcaatcagcagcctgctgtgatttccgctgtggatgaagcagtagcg
gcagaaacggcagccgaagccgtcccggctgaagaagtgaagcctgaacccgcagacgct
gtaactgataaatcggtggacgtttccgcacagcaggcagcagccagccgcgtagcccct
gtggaagtcagcacagaggttgagcagcaggttgccagggtgctgaacgcggctgacgca
tcggcgcaacagccttcagcagcggcagaacctcatgcgccggttccggtgcgtgatgaa
ccggttgacgccgcgaccgtgcaggcgggtcgctataagcatcatgctaccgccccgatg
accaaagcgccggctccggcttatcagccagaacctgcacgtcgcagcgactgggttcgt
ccggccttcaactttgaaggtaagggagcggcaggcgcgcatgcagccagccatcaggct
acggctccggcaacccgcccgtaa
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