Erwinia pyrifoliae DSM 12163: EPYR_02438
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Entry
EPYR_02438 CDS
T02121
Symbol
ycbB
Name
(GenBank) Uncharacterized protein ycbB
KO
K21470
L,D-transpeptidase YcbB
Organism
epr
Erwinia pyrifoliae DSM 12163
Brite
KEGG Orthology (KO) [BR:
epr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
epr01002
]
EPYR_02438 (ycbB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
epr01011
]
EPYR_02438 (ycbB)
Peptidases and inhibitors [BR:
epr01002
]
Cysteine peptidases
Family C82
EPYR_02438 (ycbB)
Peptidoglycan biosynthesis and degradation proteins [BR:
epr01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
EPYR_02438 (ycbB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
CAY74818
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Position
complement(2505856..2507703)
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AA seq
615 aa
AA seq
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MLLQKSSFIQALAVGCCLFSGLAVLPGAVAGTPPVSSAVVPAVSVTQSQQQIIAAFPQGI
TPFYLKNLVPLYASNGMQLMWQDPQAVRQFEQQLAEVALSGVQPQFSQWVKQLTDPAIKG
LARDVALSDAMLGYLQFTSSAPSKGEAWLYSTVPYRLEAPSMTVINQWQQALASGNLNGF
VRSLAPQHPQYARMHQALKSLLADTRPWPRIVDKQTLRPGQISNDVSALRDILQRNGMMS
SANEPVKPAAEVVGAVDAPLVHDDDNAQPDANLLTRADNNRVVSPSANLSGDVTDSAAAP
NVFNGQAALGSQANTYSPQLVEALKRFQRWQGLEADGAIGMRTREWLNVSPQQRATLLAL
NIQRLRLLPDDMQNGIMVNIPNYSLAYYVNGREILSSRVIVGRPDRKTPLMRSALNNVVL
NPPWNVPTTLVRKDIVPKVKRDPMYLYKHGYTLLAGWSNEAEVVDPSMINWSTVSAASFP
YRIRQAPGATNSLGRYKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANL
LLRDVGWNDARISGTLKEGNTRFVPIRQRIPVNLYYLTAWVAEDGQPQYRTDIYNYDNTA
RSGAQVLARAGQLLL
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgttgctgcagaaatcatcgttcattcaagcgcttgcggtcgggtgctgcctgttctcc
gggctggcagtattacccggcgcggtagcaggtacaccaccggtttcctctgctgtggtg
ccggccgtcagcgttacgcagagccagcagcaaatcattgccgctttccctcagggtata
acgccgttttatttgaaaaatcttgtgccgctgtatgccagcaatggtatgcagctgatg
tggcaggatccgcaagcggtcaggcagtttgagcaacagctggctgaagtcgccctctct
ggcgtacagccgcagttttcccaatgggtaaagcaactgacggatccggcaattaaaggg
ttggcgcgggatgtggcgctatctgatgcgatgttaggttatctgcagtttacctccagc
gcgccgagtaagggcgaagcctggctctacagcacggtgccttaccggctggaagccccg
tcgatgacggtaataaatcagtggcagcaagcccttgccagcggcaacctcaacggcttt
gtgcgctctctggcgccccagcatccgcaatatgctcgtatgcatcaggcgctgaaatcc
ctgctggcggatacccggccgtggccgcgtatagtcgataagcagacgctgcgaccgggt
cagatcagcaatgacgtatcggccttgcgtgatatcctgcaacgtaacggcatgatgtca
tcggcaaatgaacccgttaaacccgctgcggaagtggtgggggctgtcgatgcgccattg
gttcacgatgatgataatgcgcagccggacgcgaacttgctgacacgggctgataataat
cgcgtagtcagtccgtcggcgaacctgtcaggtgatgttactgactccgccgctgcaccc
aatgtgtttaacgggcaggcggcgttgggcagccaggcgaatacctattcgccgcagctg
gtggaggcgctaaagcgcttccagcgttggcaaggtttggaggccgatggcgcgataggg
atgcgcacccgcgaatggctgaacgtctcgccgcagcagcgggccacgctgctggcgttg
aatattcagcgtctgcgcctgctgcccgatgatatgcaaaacggaattatggttaacatc
ccaaattattcgctggcttactacgtcaatggccgcgaaatcctgtcttcacgggtaatc
gtgggccgtccggatcgtaaaacgccattgatgcgcagcgcgttgaataatgtggtgctt
aacccaccgtggaacgtgcctaccacgctggtacgtaaggatattgtgccgaaggtgaaa
cgggacccgatgtatctgtataagcacggttacaccctgcttgcaggctggagcaacgaa
gcggaagtggttgatccttcaatgattaactggagtacggtttctgccgcttctttcccg
taccgcatccgccaggcgcctggcgccaccaactcgctggggcgctacaagttcaatatg
ccaagctcggacgctatttacctgcatgacacgccaaatcatggcttgttccagaaggat
attcgcgctctgagttccggctgcgtaagggtaaatcgtgcttccgatctggctaattta
ctgctgcgcgatgtcggctggaacgatgcgcgtatttccggcacgctgaaagagggaaat
acccgctttgtgccgatccgtcaacgcatcccggtcaacctctattatctgaccgcctgg
gtggcggaagatgggcaaccccagtatcgtacagatatttacaattatgacaacaccgcg
cgttcgggcgcacaggtgctggcgcgggctgggcaattattgctctaa
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