Erwinia pyrifoliae DSM 12163: EPYR_03054
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Entry
EPYR_03054 CDS
T02121
Symbol
ygbO
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
epr
Erwinia pyrifoliae DSM 12163
Brite
KEGG Orthology (KO) [BR:
epr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
epr03016
]
EPYR_03054 (ygbO)
Enzymes [BR:
epr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
EPYR_03054 (ygbO)
Transfer RNA biogenesis [BR:
epr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
EPYR_03054 (ygbO)
Prokaryotic type
EPYR_03054 (ygbO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
CAY75434
LinkDB
All DBs
Position
complement(3098348..3099397)
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AA seq
349 aa
AA seq
DB search
MDLTRQGWLHGKPTASGVLKSIPEDFVVIEDLGYAPDGEGEQLLVRVRKQGCNTRFVAEA
LAKFAGIPARDVSFAGMKDRHAVTEQWFCLRLPGKVTPDLNGFQLEGVEVLESARHRRKL
RTGALQGNAFTLVLRQISDRDAVEHRLQQIAADGVPNYFGSQRFGHDGNNLTLAQRWAAD
DIRVRERSKRSFILSAARSAMFNQVVSDRLAQQGSLCRVLAGDALQLTGRGSWFVAEAAE
LDSLQQRVDSNELRITAPLPGSGEWGSRDKALAFEQNSLAHEGALIALMDRERVDAARRA
MLVIPRDLIWSWADDATLEMNFWLPAGSFATSVVRELLVTQSSSTAADE
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggatttaacccgtcagggctggctgcacggtaaacccactgccagcggtgtacttaag
agtattcccgaagatttcgtggtgattgaagatcttggttacgccccggatggagaaggc
gaacagctgctggtgcgcgtgcgtaaacagggctgcaacacgcgttttgttgccgaggcg
ctggcgaaatttgctggtatcccggcgcgcgacgtcagctttgccggcatgaaagacagg
catgccgtcaccgagcagtggttctgcctgcgtctgccgggcaaagtgacgccggacctg
aacggctttcagctggaaggggttgaggtgctggaaagcgcccgccatcgccgtaaactg
cgcaccggggcactgcagggcaatgcctttacgctggttctgcgtcagatatccgatcgg
gacgcggtggaacaccgcctgcagcagattgccgccgacggggtgccgaactattttggc
agccagcgttttggtcatgatggcaacaacctgacgctggcgcagcgctgggcggcggat
gacattcgcgtacgcgagcgcagtaaacgcagttttattctgtcagccgcacgtagcgcg
atgttcaatcaggtggtgagcgaccgtctggcgcagcagggttccctgtgtcgggtactg
gccggcgatgcgctgcagcttaccgggcgcggtagctggtttgttgcagaggccgccgaa
ctcgacagcctgcagcagcgcgtggacagcaacgagttgcgtatcaccgcgccgctgccg
ggtagtggcgaatggggttcgcgtgacaaggcgctggccttcgagcaaaacagcctggcg
catgagggcgcgcttatcgcgttgatggatcgtgagcgggtcgatgctgcgcgccgtgcg
atgctggtgataccccgcgacctgatctggagctgggccgatgacgccacgcttgagatg
aacttctggctgccggccggcagctttgccaccagcgtggtaagagaactgttggtcact
cagagcagttccaccgcagcagacgagtag
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