Candidatus Endoriftia persephonae: L0Y14_01740
Help
Entry
L0Y14_01740 CDS
T08211
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eps
Candidatus Endoriftia persephonae
Pathway
eps03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eps00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L0Y14_01740 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eps03021
]
L0Y14_01740 (rpoC)
03400 DNA repair and recombination proteins [BR:
eps03400
]
L0Y14_01740 (rpoC)
Enzymes [BR:
eps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L0Y14_01740 (rpoC)
Transcription machinery [BR:
eps03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L0Y14_01740 (rpoC)
DNA repair and recombination proteins [BR:
eps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L0Y14_01740 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
USF87991
UniProt:
A0A9J6ZZ81
LinkDB
All DBs
Position
371373..375587
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNILKQQGQTEEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVSDYECLCGKYKRLKHRGVVCEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESFVVVDPGMTPLERSQLLTDEQYLEALEENGDEFDARM
GAEAVYELLKTIDIPEEIKRLREDIEGTNSETKIKKFTKRLKLLESLNQSGNRPEWMVMT
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFIFSKLQLRGLATTIKAAKKLVERGTTEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLVEGKAINLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RSLMMATNNILSPANGDPIIVPSQDVVLGLYFMTRERVNAKGEGMAFADIEEAKRAYDAG
QADLQARVKVRIREVEIGEDGSRREKYSIVDSTVGRAIVFEIVPDGLPFSLVDQPMGKKA
ISNLINASYRRLGLKDTVVFADQLMYMGFRFATRAAVSFCANDMVVPEEKSEILARAEEE
VKEIENQYISGLVTNGERYNKVVDIWSHTNDQVAKAMMAKLGKRKVTDHEGNEVEQDSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDMVVLEEDCGTEEGLVMQPIIEGGDVVEPLRERIL
GRVTAVDLYRPGSDELVCEAGTLLDEEWVDTLERVGIDQVVVRSAITCKARVGVCAQCYG
RDLARGHRVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAVNNVQVKTGGTVRL
HNIKTVKHAAGHLVATSRSGELTVVDEVGRERERYKVPYGATLQVADESPVEGGQIVANW
DPHTHPVITEVEGTLVFVDFVDGVTVQSQVDDVTGLSSLVVIDPKQRPAAGKDIRPMVKL
VDAEGNDLNIAGTDIPAHYFLPSEAIIGVQDGAAVGVGDVLARIPQESSKTRDITGGLPR
VADLFEARKPKDQAILAEATGTVSFGKDTKGKQRLVVTDSEGEQHEELIPKWRHVNVFEG
EHVVKGDVISDGELNSHDILRLKGVTDLAEYLVKEIQDVYRLQGVKINDKHIEVIIRQML
RKVEVVSSGDSKYLKGEQVEKASLLEEAEQLRKDGKHPALYEPLLLGITKASLATESFIS
AASFQETTRVLTEAAVRGSSDSLNGLKENVIVGRLIPAGTGLSYHKDRRRKRMEATMEEE
SKPELVVEEVEQAFKEALNTPEVE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatcttctgaacattctgaagcagcaggggcagactgaggaattcgatgcaatt
cgcatcggtttggcctcccctgacatgatccggtcctggtcctatggcgaagtaaagaag
ccagagaccatcaactaccgcaccttcaagccggagcgcgatggcctgttttgcgccaag
atcttcggcccggtgagtgactatgagtgcctgtgcggcaagtacaagcgtctcaagcac
cgtggcgtggtgtgtgagaagtgcggcgttgaagtgaccctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggccagtccggtggcgcacatctggttcctcaagtcgttg
ccgtcgcgtatcggcctgctgatggacatgacgctacgcgatatcgagcgggtgctctac
tttgagtcgttcgtcgtggttgaccccggcatgacgccgctggagcgcagtcagctgcta
accgatgagcagtatctggaggcgcttgaggagaacggcgatgaatttgatgcgcgcatg
ggcgccgaggcggtctatgagctgctcaagaccatcgacatcccggaggagatcaagcgt
ctgcgggaggatatcgagggcaccaattccgagaccaagatcaagaagtttaccaagcgg
ctgaagctgctggagtcgctcaatcagtctggcaatcgccccgagtggatggtgatgacc
gtgctgccagtgttgccgccggagctgcgtccgctggtgccgctggatggtggtcggttt
gccacctccgatctaaacgatctctaccgtcgggtgatcaaccgcaacaatcgtctgaag
cggctgcttgatctgaatgcccccgatatcatcgtgcgcaacgagaagcgcatgttgcag
gagtcggtggatgcgctgctcgacaacggtcgccgcggacgcgccattaccggcaccaac
cgccgtccgctgaagtcgctggccgacatgatcaagggcaagcaggggcgctttcgtcag
aatctgttgggtaaacgtgtcgactattccgggcgttcggtcatcgtggtcggcccgacc
ctcaagctgcatcagtgcggcctgccgaagaagatggcgctggaactattcaagccgttt
atcttctccaagctgcagctgcgtggcctggctaccaccatcaaggcagcgaagaagctg
gtagagcgcggcaccaccgaggtctgggatatcctcgaagaggtgatccgcgagcacccg
gtgatgcttaatcgcgcaccaaccttgcaccgtctcggcatccaggcgtttgagccggtg
ctggtggagggtaaggcgatcaacctgcatccgctggtttgtaccgccttcaatgctgac
ttcgatggcgaccagatggcggtgcatgtgccactctcgctggaggcgcagctcgaggcg
cgcagcctgatgatggcgaccaacaacatcctctctccggccaacggcgacccgatcatc
gtgccttctcaggacgtggtactggggctctacttcatgacccgcgagcgggtcaacgcc
aagggcgagggcatggccttcgccgatatcgaagaggccaagcgtgcctacgatgctggt
caggccgacctgcaggcgcgggtcaaggtgcgtatccgtgaggtcgagatcggcgaggat
ggcagtcgtcgtgaaaaatattcgatcgtcgatagcacggttggtcgggctatcgtattt
gagatcgtgcccgacgggctgcccttctcgctggtggatcagccgatgggtaagaaggcg
atctctaacctgatcaatgcctcctatcgtcgcctcggtctgaaagacaccgtggtgttc
gccgaccagttgatgtacatgggtttccgtttcgcaactcgggccgcggtctctttctgc
gccaatgatatggtggtgccggaggagaagagcgagatcctggcgcgggcggaggaggag
gtcaaggagatcgagaatcagtacatctccggtctggtgaccaacggcgagcgctacaac
aaggtggtggatatctggtcccacaccaatgaccaggtggccaaggcgatgatggccaag
ctcggcaagcggaaggtcaccgatcatgagggcaacgaggttgagcaggactccttcaac
tcggtctacatgatggcggactctggcgcgcgtggttccgctgcccagattcgccagctg
gcgggtatgcgaggcctgatggccaagcccgacggctcgatcattgagacgccgatcacc
gccaacttccgtgaggggctcgacgtactgcagtacttcatctccacccatggcgcacgt
aagggtctggccgacaccgcgctgaagacggctaactccggttacctgacgcgtcgactg
gtcgatgtggcgcaggacatggtggtgttggaggaagattgcggcaccgaagaggggctg
gtgatgcagccgatcatcgaaggcggtgatgtggtcgaaccgttgcgcgagcgtatcctc
ggacgcgtaaccgccgtcgatctctaccgccccggcagcgatgagctggtctgcgaagct
ggcacactgctcgatgaggagtgggttgataccctggagcgggttggtattgaccaggta
gtggtgcgttctgccatcacctgcaaggcccgggtcggtgtctgtgcccagtgttatggt
cgagatctggcgcgaggtcaccgggtgaatcagggtgaggcggttggtgttatcgctgcc
cagtcgatcggcgagcccggcacccagctaaccatgcgtaccttccatatcggtggcgcc
gcgtcacgttctgcggcagtcaacaatgttcaggtgaagaccggcggtactgtacggctg
cacaacatcaagacggtcaagcatgcggcagggcacttggtggcgacatcacgctccggt
gagctgaccgtggttgatgaggtagggcgtgagcgcgagcgctacaaggtgccctacggt
gcaaccctgcaggtggccgacgagtcgccggtggaaggcggtcagatcgtcgccaactgg
gatccgcatactcacccggttattaccgaggtggagggcaccctggtgtttgtcgacttc
gtcgacggcgtcaccgtgcagagtcaggtggacgatgtcacgggccttagctcgctggtg
gtcatagatccaaagcagcggcctgcggcgggcaaggatatccgtccgatggtgaaactg
gttgatgccgaaggcaatgacctgaatatcgctggcaccgacatccctgcccactacttt
ctgccgtctgaggcgattatcggtgtgcaggatggtgccgcagtgggcgttggtgacgtg
ttggcgcgtattccgcaggagtcatccaagacccgtgatatcacgggtggtttgccgcgt
gttgcagatctgttcgaggcgcgcaagccgaaggatcaggcgatcctcgccgaagctacc
ggtaccgtcagttttggtaaggacaccaagggcaagcagcgtttggtggtgaccgattcg
gaaggcgaacagcatgaagagctgattccgaaatggcggcacgtcaacgtgtttgaaggt
gagcatgtggtgaagggcgatgtgatctccgacggcgagctcaattcgcacgacatcctg
cgcttgaagggcgtaactgaccttgccgaatatctggtcaaggagattcaggacgtctac
cggctgcagggcgtgaagatcaacgacaagcacatcgaagtgatcatccgccagatgctg
cgtaaggtcgaggtcgtcagttcgggcgacagcaaatacctcaagggcgagcaggtggaa
aaggcttctctgttggaggaggcggagcagctgcgtaaagatggcaagcatccagcgctc
tatgagccgctcctgctgggcatcaccaaggcttcgctggcaaccgagtccttcatctcg
gcggcctccttccaggagaccacgcgagtgctgactgaggcggcggtgcgtggctccagc
gatagccttaatgggcttaaggagaacgtcattgttggtcgtttgattccggcaggtacc
ggcctctcctatcacaaggatcgccgtcgtaagcggatggaggcgacgatggaggaggag
agtaagcctgagctggtggtggaagaggtggagcaggcctttaaggaggcgctgaacacc
ccggaagtggagtaa
DBGET
integrated database retrieval system
