Candidatus Endoriftia persephonae: L0Y14_05145
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Entry
L0Y14_05145 CDS
T08211
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
eps
Candidatus Endoriftia persephonae
Brite
KEGG Orthology (KO) [BR:
eps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eps03016
]
L0Y14_05145
Enzymes [BR:
eps01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
L0Y14_05145
Transfer RNA biogenesis [BR:
eps03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
L0Y14_05145
Prokaryotic type
tRNA splicing ligases
L0Y14_05145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
USF88619
UniProt:
A0A9J7A0D6
LinkDB
All DBs
Position
1143104..1144534
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AA seq
476 aa
AA seq
DB search
MEFRPLATESPYAWRIAPQGKMRVPAIIYADHALIEAMDHKVFEQLSNVASLPGIQQAAY
AMPDAHWGYGFPIGGVAAFDPDEGGVVSGGGVGFDISCGVRTLHTGLTLDQLRPHKKALA
DLLAVAIPAGLGSTGTIKLTHREMDQMLIGGAAWAVQQGYGSEADLLRTEEHGCMAGANP
ADVSEKAKERQRREMGTLGSGNHYLEVQLVAQVYDAETAAAFDLREGEIVISIHCGSRGL
GHQIGTEFLKFMATKAKDHGIWLPDRELACAPIESKLGQSYLGAMRAGINCALANRQILT
HLTREVCDDVLPGTQLTLLYDVSHNTCKRETHRIDGKEKQLFVHRKGATLALGPGHPNLP
DGLREVGQPVIIGGSMGTESYILAGVKESEKLAFSSACHGAGRAMSRHQATKRWHGRNVI
KELETRGILIRSPSLRGVAEEAPGAYKDVSRVVDVAHQAGLSRKVARLEPLICVKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggaattcagacccctagccaccgaatcaccctacgcctggcggatcgcgccccagggc
aagatgcgggtgccagccatcatctatgccgatcacgcgctgatcgaggccatggaccac
aaggtcttcgaacagctcagcaatgtcgccagcctgcccggcatccagcaggccgcctac
gccatgccagacgcccactggggttatggttttcccatcggtggtgtggcggcgtttgat
ccggatgaaggtggtgtggtctcgggcggcggcgtcggcttcgacatctcctgtggcgta
cgcaccctgcacaccggtctgacgctcgatcagttgcgcccccacaaaaaggccttggcc
gacctgctggctgtggccatcccggcgggcctgggcagtacaggcactataaagctgaca
catcgcgagatggaccagatgctgattggcggtgccgcctgggcggtgcagcagggctac
ggtagcgaggccgacctgctccgcaccgaggagcatggctgcatggccggagccaacccg
gccgatgtctcggaaaaggccaaggagcgacagcgccgcgagatgggaaccctgggttcc
ggcaatcactacctggaggtccagctggtcgcccaagtctatgatgccgaaactgcggct
gccttcgatctcagggaaggcgagatcgtgatcagcatccactgcgggtcgcgtggcctg
ggccatcagatcggtaccgagttcctcaagttcatggccaccaaggccaaggatcacggc
atctggctgccggaccgcgaactggcctgtgcgccgatcgagtccaaactcgggcagtcc
taccttggggccatgcgtgccggtatcaactgcgccctggccaatcgccagattctcacc
catcttacccgcgaggtatgcgacgacgtcctgcccggcacccagctgacgctgctttat
gatgtctcacacaatacctgtaaacgcgagacccacaggatcgacggtaaggaaaaacag
ctgtttgtacatcgcaagggcgcgaccctggcgctcggtcccggacaccccaacctgccg
gatggtctgcgcgaggttggacagccggtgatcatcggcggctccatgggcaccgagtcc
tacatattggctggtgtcaaagagagcgaaaagctggccttcagctccgcctgccatggc
gcgggccgtgccatgagccgccaccaggcgaccaagcgctggcatggcaggaacgtcatc
aaggaactggagacccgcggcatcctgatccgcagcccatccctgcgtggcgtggccgaa
gaggcgccgggtgcctacaaggatgtcagccgggtagtcgatgttgcccatcaggccggg
ctatcgcgcaaggtggcgcgccttgagccactgatctgcgtgaagggatga
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