Candidatus Endoriftia persephonae: L0Y14_08980
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Entry
L0Y14_08980 CDS
T08211
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eps
Candidatus Endoriftia persephonae
Pathway
eps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0Y14_08980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eps03019
]
L0Y14_08980
03009 Ribosome biogenesis [BR:
eps03009
]
L0Y14_08980
Enzymes [BR:
eps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L0Y14_08980
Messenger RNA biogenesis [BR:
eps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L0Y14_08980
Ribosome biogenesis [BR:
eps03009
]
Prokaryotic type
rRNA helicases
L0Y14_08980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
USF86281
UniProt:
A0A9J6ZU04
LinkDB
All DBs
Position
2013442..2015262
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AA seq
606 aa
AA seq
DB search
MSTDSPIPFDSLGLSEPIMQALADVGYESPSPIQQASIPPLLEGKDLLGQAQTGTGKTAA
FALPLLSRIDLSRKTPQFLVLAPTRELAIQVAEAMQSYARHIKGFHVLPIYGGQPYDHQL
RQLRRGVQVVVGTPGRVMDHIRRGTLKLDNLDALVLDEADEMLRMGFIDDVEWILEQTPQ
TRQIALFSATMPSIIRKVAQRHLNDPTEIKIAAKTSTATTIRQRYWQVSGLHKLDALTRI
LECESFDAMLVFVRTKIATVELAEKLEARGYASEALNGDIPQKQRERTVERFKAGRLDIL
VATDVAARGLDVERISHVINYDIPYDTESYVHRIGRTGRAGRTGDAILFVSPKERRLLRT
IERATRQPIERMQMPSAGDINEKRMQRFKDRISDALAGDDLDLYYQIVSAVQQESDADPL
DVAAAVARLLQGDEPLLLVDKPHKRERPERSERQRDTRERDFDKPRQREPRFEKPISAEP
KPLKEFPEIEMVRYRIEVGYQHEVKPGNIVGAIANEADIESSYIGHIEIHDDFSTIDLPE
GMPKEILQLLRKVRVCGQKLEIAPFRIGGGAEKPPRKPKPNFKRGSKIRKDQRGNRDKKP
RKSKKS
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgacagccccatacctttcgactccttaggcctctccgagccgatcatgcag
gccctggccgacgtgggctacgagtccccctcgccgatccagcaggcgagcatcccaccg
ctgttggaggggaaagacctgctcggtcaggcacagaccggcaccggcaagaccgccgcc
ttcgccctgccgctgctgtcacgcattgatctgtcgcgcaagaccccgcaattcctggtg
ctggcgccgacccgcgaactggcgattcaggtggccgaggcgatgcagagctacgcccgc
cacattaagggcttccacgtactgccgatctacggcggccagccctacgatcaccagcta
cgccagctcaggcgcggcgtacaggtggtggtcggcacccccggccgggtcatggaccac
atccgccgcggcaccctcaagctcgacaatctcgacgccctggtgctcgacgaggcggac
gagatgctgcgcatgggtttcatcgacgacgtcgagtggatactcgaacagactccacag
acacgccagatcgcgctcttctccgccaccatgccgtcgatcatccgcaaggtggcgcag
cgccatctgaacgacccgacggagatcaagatcgccgccaagacctccaccgccacgacc
atccgccagcgctactggcaggtcagcgggctacacaagctcgacgctctgacccgcatc
ctggagtgcgagagcttcgacgcgatgctggtcttcgtgcgcaccaagatcgccaccgtg
gagctggcagagaagctggaggcgcgcggctacgccagcgaggcgctcaacggcgacatc
ccgcagaaacagcgcgaacgcacggtggagcgtttcaaggcaggccgcctcgacatcctg
gtcgccaccgacgtggccgcccgcggcctcgacgtggagcgcatcagccacgtcatcaac
tacgacatcccctacgacaccgaatcctacgtgcaccgcatcggccgcaccggccgcgcc
ggccgcactggcgatgcaatcctgtttgtctcacccaaggagcggcgcctgctgcgcact
atcgagcgggccacccgccagcccatcgaacggatgcagatgccctccgccggcgacatc
aacgagaagcgcatgcagcgcttcaaggatcgcatcagcgacgccctggccggcgacgac
ctggacctctactaccagatcgtcagcgcggtgcagcaggagtccgacgccgacccgctg
gatgtggccgccgccgtagcgcgactgctgcagggcgacgaaccgctgctgctggtggat
aaaccccacaagcgcgagcgcccagagcgttcggagcgacagcgcgatacgagggaacgg
gacttcgacaaaccacgccagcgcgagccccgcttcgaaaaacccatttccgccgagccc
aagccgctgaaggagttccccgagatcgagatggtgcgctaccggatcgaggtcggctat
cagcacgaggtcaaacccggcaacatcgtcggcgccatcgccaacgaagccgacatcgag
agcagctacatcggccatatcgagatccacgacgacttctccaccatcgacctaccggag
gggatgccgaaagagatcctgcagttgctgcgcaaggtgcgggtgtgtggacagaagctg
gagattgcgccattcagaatcggcggcggtgctgaaaaaccgccacgcaagcccaagccg
aacttcaagcgtggcagtaaaatcaggaaggatcagaggggcaaccgcgacaaaaaacct
cgtaagtcaaagaagtcatga
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