Candidatus Endoriftia persephonae: L0Y14_10875
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Entry
L0Y14_10875 CDS
T08211
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eps
Candidatus Endoriftia persephonae
Pathway
eps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0Y14_10875 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eps03019
]
L0Y14_10875 (rhlE)
Enzymes [BR:
eps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L0Y14_10875 (rhlE)
Messenger RNA biogenesis [BR:
eps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L0Y14_10875 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HI1480
P-loop_SecA
UvrD-helicase
UTP25_NTPase-like
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
USF86640
UniProt:
A0A9J6ZVD8
LinkDB
All DBs
Position
2416285..2417742
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AA seq
485 aa
AA seq
DB search
MSFEKLGLSAPILRAVSEQGYTQPTPVQQQAIPVILSGRDVMAGAQTGTGKTAGFTLPLL
ELLEEHAQGKGRRPVRALVLTPTRELAAQVGESVEQYGKYLPLKSTVIFGGVKINPQIEK
LRHGVDILVATPGRLLDHVSQKTLDLSHIEILVLDEADRMLDMGFIHDIRKVLRLLPHER
QNLLFSATYSQEIKRLASDLLNQPEQIEVARRNTAAELVSQVVYPVDKARKRELLSHMIG
ANNWRQVLVFTRTKHGANRLAQQLEKDGLSAAAIHGNKSQGARTRALANFKSGEVRVLVA
TDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGNEGEAVSLVCIDEHKLLRDIE
RLLKRKITEKVLPGYEPDPSIPAEPIRQGRGAPGGQRQGRRSGQPQQRRSEGRSSAKRST
SGAQTERSNTQKRGDSHADHAGHADGQRRSQSKSHKKPTRPAQQRSASGSQRRRRSGEKP
ALLGG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgagaaactcggcctctcggccccgatcctgcgtgctgtttccgaacagggc
tacactcaacccacgccagtccaacagcaggcgatcccggtcatcctcagcggccgcgac
gtgatggctggcgcccagaccggcaccggcaagaccgccggtttcaccctgccgctgctg
gaactgctcgaggaacatgctcaaggaaaaggccgccgcccggtacgggcgctggtgctg
accccaacccgagagctggcagcacaggtgggcgagagcgtggagcagtacggcaaatat
ctgccgctaaaatccaccgtgatcttcggcggggtgaagatcaacccacagatcgaaaag
ctacgtcacggcgtcgacatcctggtcgccacccccggccgcctgctcgaccacgtttca
cagaagaccctggatctctcccacatcgagatcctggtgcttgacgaggcagaccggatg
ctcgacatgggtttcatccacgacatccgcaaagtgctgaggctactgccccatgagcgc
cagaacctgctcttctccgccacctattcgcaggagatcaaacggctggccagcgacttg
ctcaaccagccggagcagatcgaggtggcccgccgcaataccgccgccgagctagtcagc
caggtagtttacccggtagacaaggcgcgcaagcgtgagctgctctcccacatgatcggc
gccaacaactggcgccaagtgctggtcttcacccgcaccaagcacggtgccaaccggctg
gcacaacagcttgagaaggatggcctgagcgccgcggcgatccacggcaacaagagtcag
ggggcacgtacccgggcgctagccaacttcaagagtggtgaggtacgggtgctggtggcg
accgacatcgccgcccgcgggctcgatatcgatcagctgccgcatgtggtcaactatgag
ctgccgaatgtgccggaggactatgtgcaccgtatcggccgcaccggtcgcgccggcaac
gagggcgaggcggtgtcgttggtctgcatcgacgaacacaagctgctgcgggacatcgag
cggctactgaagcgcaagattaccgagaaggtgctccccggttacgaacccgacccaagc
atcccggcagagccgatcaggcagggacgcggcgcgccaggcggacagagacagggccgg
cgatcggggcaaccccagcagcgccgttccgaaggccgctctagtgcaaaacgcagcact
tctggtgcacagacagagagatcgaatacgcagaaaagaggcgactcccatgccgatcat
gccggccacgccgatggccagcgccgctcccagagcaagtcacacaagaagccgacacgg
cctgcacagcagcgctcagctagtggatcccaacgtcggcggcgcagtggcgaaaagccg
gccctgctaggcggctaa
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