Enterobacter pasteurii: HWQ17_04100
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Entry
HWQ17_04100 CDS
T09666
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ept
Enterobacter pasteurii
Pathway
ept03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ept00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HWQ17_04100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ept03400
]
HWQ17_04100 (mfd)
Enzymes [BR:
ept01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HWQ17_04100 (mfd)
DNA repair and recombination proteins [BR:
ept03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HWQ17_04100 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QLA66866
LinkDB
All DBs
Position
858309..861755
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVVLVAPDMQNALRLHDEIR
QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRVQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDRFDVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEMLWLRTDELNAELKRWPRMLLKTDSLADKAANTNLAFRTLPD
LSVQAQQKAPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKIAPKRILRLSEATG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKEGYAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQTQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKSEGELEEIKVELIDRFGILPDPARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVDPMWLIGLLQKQPQHFRLDGPTRLKFTQDLAERKTRMDWVRNFMR
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacactatcgttactccttgcctgttaaagcaggtgaccaacgccagctgggc
gaacttacaggcgcggcctgcgccacgctggtggcggaaattgctgaacggcacccaggg
ccggtggtgctggttgccccggacatgcaaaacgccctgcgcctgcacgacgaaattcgt
cagttcaccgacagtctggtattcagcctggccgactgggaaacccttccctatgacagt
ttctccccgcaccaggagataatctcctcgcgcctgtcgaccctgtatcagctccccacc
atgcagcgcggcgtgctgattgtgccggtaaatacgctgatgcagcgcgtctgtccgcac
agctatctgcacggccatgcgctggtgatgaaaaaaggccagcgcctgtcgcgcgacgcc
ctgcgcgtgcagctggacggtgccggttatcgtcatgtcgaccaggtaatggagcacggc
gaatacgcgacgcgcggtgcgctgctggatctctatccgatgggcagcgaccagccgtat
cgtctggatttcttcgatgatgagatcgacagccttcgcgtgttcgacgccgacacccag
cgcacgctggaagaggtggaatccattaacctgctgcccgcccatgagttcccgacggat
aaaaccgccatcgaactgttccgcagccagtggcgcgacaggttcgacgtgaagcgcgat
gccgaacatatctatcagcaggtcagcaaagggactctgcctgccgggattgaatactgg
cagccgctgttctttaacgaacccttgcctgcgctgttcagctatttcccggcgaatacg
ctgattgtgaataccggtgatatcgacgccagcgccagtcgctttgaaagcgagacccgc
gcgcgctttgaaaaccggggcgtagacccgatgcgtccgctgctgccgccggaaatgctg
tggctgcgcaccgacgagctgaacgccgagctgaaacgctggccgcgcatgctgctcaaa
accgattcccttgcggataaggcggcgaataccaatctggcgttcagaacgctgcccgat
ctttccgtgcaggcgcagcagaaagcgccgctggataatctgcgcaagtttcttgagtcc
tttaccggaccggtggtgttctccgtagagagtgaaggccgtcgtgaagcgctgggcgag
ctgctggggcgcattaagatagcgccgaagcgcattcttcgcctgagcgaagcgacaggc
aatggccgctacctgatgatcggggccgccgagcacggattcattgatacgctcaataac
ctggcgctgatttgcgaaagcgatctgctgggcgagcgcgtggcgcgtcgtcgtcaggac
agccgtcgcaccatcaacccggacacgctgatccgcaacctggccgagctgcaccccggg
cagccgatcgttcacctggagcacggcgtgggccgctatcaggggatgaccacccttgaa
gcaggcggcatcaaaggtgaatacctgatgctgacctacgctaacgacgccaaactgtac
gtgccggtgtcgtccctgcacctcattagccgctacgccgggggcgcggaagagaatgcg
ccgctgcacaagctgggcggcgacgcctgggcccgcgcgcggcagaaggcggcggaaaaa
gtgcgcgacgtggccgccgagctgctggacatttacgcccagcgtgcggccaaagagggc
tatgcgtttaagcatgataaagagcagtaccagctgttctgcgacagcttcccgtttgaa
accacgccggaccaggctcaggccatcaacgccgtgctgagcgacatgtgccagccgctg
gcgatggaccgactggtgtgcggcgacgtgggcttcggtaaaacggaagtggcgatgcgc
gccgctttcctggccgttgagaacaacaagcaggtggccgtgctggtgcccaccaccctt
cttgcccagcagcactttgacaacttccgcgaccgcttcgccaactggccggtacgtatt
gagatgctgtcccgtttccgcagcgccaaagagcagacgcagatcctggagcaggccagc
gaaggcaaaatcgacattctcatcggcacccacaagctgctgcaaagcgacgtgaagtgg
aaagatttagggcttctgatcgtcgatgaagagcaccgcttcggggtgcgccataaagag
cgcatcaaagcgatgcgcgccgacgtcgacattctgaccctgaccgcaacgccgatcccg
cgtacgcttaacatggcgatgagcggcatgcgcgatctgtcgattattgccaccccaccg
gcgcgccgtctggcggtgaaaaccttcgtacgcgagtacgacaatctggtggtacgagag
gcgatcctgcgtgaagtgctgcgcggtggccaggtttattatctctataacgatgtcgaa
aacatccagaaagccgccgacaggctggcggagctggtgccggaagcgcgcatcgccatt
ggccacggccagatgcgcgagcgcgagcttgagcgggtgatgaatgatttccaccaccag
cgcttcaacgtgctggtgtgtaccaccattattgagaccggcatcgatattccaaccgcg
aacacgattattatcgaacgcgcggatcacttcggtctggcccagctgcaccagctgcgg
gggcgcgtcgggcgttcgcaccatcaggcctatgcgtggctgcttacgccgcatccgaag
gcgatgaccaccgacgcgcaaaagcgtctggaagctatcgcctcgctggaagatctgggc
gctggctttgcgctggcgacgcacgacctggagatccgcggcgccggtgagctgttgggt
gaagatcagagcggctctatggaaaccatcggtttctcgctgtacatggagctgctggaa
aatgccgtcgacgcccttaaggccggacgtgaaccgtctctggaagatctcaccagccag
cagaccgaagtggagctgcgcatgccttccctgctgccggatgatttcattcctgacgta
aacactcgcctgtcgttctacaaacgcattgccagcgcgaaaagcgaaggcgagctggaa
gagatcaaagtcgagctgatcgaccgtttcggcatactgcccgacccggcgcgcaacctc
cttgatattgcccgactgcgtcagcaggcgcagaagctggggatccgcaagcttgaaggc
aacgaaaaaggcggcgtgattgagtttgccgagaagaaccatgttgatccgatgtggctg
attggccttctgcaaaaacagccgcagcatttccgactagatggcccgacgcgcctgaaa
tttacgcaggatctggcggaacgtaaaacccgcatggactgggtgcgtaactttatgcgc
cagctggaagaaaacgccatcgcctaa
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