Enterobacter pasteurii: HWQ17_16780
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Entry
HWQ17_16780 CDS
T09666
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ept
Enterobacter pasteurii
Pathway
ept02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ept00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HWQ17_16780 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ept03021
]
HWQ17_16780 (rpoD)
Transcription machinery [BR:
ept03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HWQ17_16780 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
QLA69170
LinkDB
All DBs
Position
complement(3503878..3505722)
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AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAETSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTA
THVGSELSQEEMDDDEDEDEEEDDDSSDDDNSIDPELAREKFAELRTQYEVTRDTIKAKG
RSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVKEDVQRGLQKLHQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtccaacgcggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcag
atcgaagatatcatccaaatgatcaatgacatgggcattcaggtgatggaagaagcaccg
gatgccgatgatctgttgctggctgaaacctccaacaacactgacgaagatgcggaagaa
gctgctgcacaggtactgtccagcgtggaatctgaaatcgggcgtaccactgacccggtc
cgcatgtacatgcgcgaaatgggtaccgttgaactgttgacccgcgaaggcgaaattgac
atcgcaaaacgcatcgaagacgggatcaaccaggttcagtgctctgttgccgaatacccg
gaagcgattacctatctgctggagcagtacgatcgcgttgaagcggaagaagcgcgtctg
tccgatctgatcaccggctttgtcgacccgaacgctgaagaagatatggcgcctaccgcc
actcacgtcggttctgagctgtctcaggaagagatggatgacgacgaagacgaagatgaa
gaagaagacgacgacagcagcgatgacgacaacagcatcgatcccgagctggcgcgtgag
aaatttgccgagctgcgtacccagtacgaagtgacgcgtgacaccatcaaagcgaaaggc
cgcagccatgccgccgctcaggaagagatcctgaagctgtctgaagtgttcaaacagttc
cgcctggtgccaaaacagttcgactacctggtaaacagcatgcgcgtgatgatggatcgc
gtacgtacccaggaacgcatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaag
aagaacttcatcaccctcttcaccggcaacgaaaccagcgaaacctggttcaacgccgct
atcgcgatgaacaagccgtggtctgaaaaactgcacgacgtgaaagaagacgtgcagcgc
ggcctgcagaaactgcaccagattgaagaagagaccggcctgaccatcgagcaggtgaaa
gacatcaaccgtcgtatgtccatcggtgaagcgaaggcccgccgtgcgaaaaaagagatg
gttgaagcgaacttacgtctggttatctctatcgctaagaaatacaccaaccgtggcctg
cagttcctggatctgattcaggaaggcaacatcggtctgatgaaagcggtagataagttt
gaataccgtcgtggttacaagttctccacctatgctacctggtggatccgtcaggcgatc
acccgctctatcgcagaccaggcgcgcaccatccgtattccggtgcatatgattgagacg
atcaacaagctcaaccgtatctcccgccagatgctgcaggagatgggccgcgagccgacg
ccggaagagctggccgagcgcatgctgatgccggaagacaagatccgtaaagtgctgaag
atcgccaaagagcctatctccatggaaacaccaatcggtgatgatgaagattcgcatctg
ggggatttcatcgaggataccaccctcgagctgccgctggactctgccaccaccgaaagc
ctgcgtgccgccacgcacgacgttctggctggcctgaccgcgcgtgaagcaaaagtgctg
cgtatgcgtttcggtatcgatatgaataccgaccacacgctggaagaagtgggtaaacag
ttcgacgtgacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaagctgcgc
cacccgagccgctctgaagtgctgcgtagcttcctggacgactaa
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