Enterobacter pseudoroggenkampii: QVH39_01050
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Entry
QVH39_01050 CDS
T09244
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
epu
Enterobacter pseudoroggenkampii
Pathway
epu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
epu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QVH39_01050 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
epu03021
]
QVH39_01050 (rpoC)
03400 DNA repair and recombination proteins [BR:
epu03400
]
QVH39_01050 (rpoC)
Enzymes [BR:
epu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QVH39_01050 (rpoC)
Transcription machinery [BR:
epu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QVH39_01050 (rpoC)
DNA repair and recombination proteins [BR:
epu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QVH39_01050 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WJW86254
LinkDB
All DBs
Position
227578..231801
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERHQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDILKPGTADILVPRNTLLHEHWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKSVVNSAGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDALARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIENAGSSEFLEGEQVEYSRVKIANRELEANGKIGATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgagctggcgtctccgaccgctcacatctggttcctgaaatctctg
ccgtcccgtatcggtctgctgctggatatgccgctgcgtgatatcgaacgcgttctgtac
ttcgaatcttatgtggtaatcgaaggcgggatgacgaacctggaacgtcatcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctattcaggccctgctgaagagcatggatctggagcaagagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaaacgtaaaaagctgaccaagcgt
atcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccactggttccgctggatggtggtcgtttc
gcaacgtccgatctgaacgatctgtatcgtcgcgttatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtagatgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccattc
atctacggcaagctggaactgcgtggcctggccaccaccatcaaagccgcgaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcatttgagccagtc
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagcttgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccagcgaacggtgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttaccgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatacgaaaaagatgaaaac
ggtgaattcgttgcgaaaaccagcctgaaagacacgaccgttggccgtgcgattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcg
atctccaaaatgctgaacacctgctaccgcattttgggtctgaagccgaccgttatcttc
gctgaccagacaatgtataccggctttgcttatgcagcgcgttcaggtgcatctgttggt
atcgatgacatggtcatcccagagaagaaacacgagatcatctctgaagcggaagccgaa
gttgctgagatccaggagcagttccagtctggtctggttaccgcgggcgaacgctataac
aaagttatcgatatctgggcagcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcagaccgaaaccgtgattaaccgtgacggcgtagaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttccgcagcacagattcgtcagctg
gcaggtatgcgtggtctgatggcgaagccagatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgctcgt
aaaggtctggcggataccgcactgaaaacagcgaactccggttatctgacgcgtcgtctg
gttgacgttgcccaggatctggttgtgaccgaagacgattgtggcaccctcgaaggtatc
accatgacccctgttatcgagggtggtgatgttaaagagccactgcgcgatcgcgttctg
ggtcgtgtgaccgcggaagacattctgaagccgggtactgcagacattctggttccacgc
aacacgctgctgcacgagcactggtgtgacctgctggaagcgaactctgttgactcagtg
aaagtgcgttccgttgtatcctgtgacaccgactttggtgtatgtgcgcactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagcaatcggcgttatcgcggca
cagtctatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaagctc
agcaacgcgaagtctgttgttaactccgcaggcaagctggttgtgacctctcgtaacacc
gagctgaaactgatcgacgaattcggtcgtaccaaagagagctataaagtgccttacggt
gcggttatggcgaaaggtgatggcgagcaggttgccggcggtgaaaccgttgcaaactgg
gatccacacaccatgccggttatcaccgaagtaagtggtttcatccgctttactgacatg
atcgacggccagaccattactcgtcagaccgacgagctgaccggtctgtcttctctggtg
gttctggattctgctgaacgtactaccggtggtaaagatctgcgtcctgcgctgaaaatc
gttgatgctcagggtaacgacgttctgatccctggtaccgacatgcctgcgcagtacttc
ctgccgggtaaagcgatcgttcagttggaagatggcattcagatcggtgcgggtgatgct
ctggcgcgtattccacaggaatccagcggtaccaaggacatcaccggtggtctgccacgc
gttgcggacctgttcgaagcacgtcgtccgaaagagcctgcaatcctggctgaaatcagc
ggtatcatctccttcggtaaagagaccaaagggaaacgccgtctggttatcactccagta
gatggtagcgaaccgtacgaagagatgattcctaagtggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgatggtccagaagcgccgcacgacatt
ctgcgccttcgtggcgtacacgcggtaacgcgttacatcaccaacgaagtgcaggacgtt
taccgtctgcagggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagcaaccatcgaaaacgcaggcagctccgagttcctggaaggcgagcaggtt
gaatactcacgcgtcaagatcgctaaccgcgaactggaagcgaacggcaaaatcggtgcg
accttctcgcgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tctgcagcatcgttccaggaaacgactcgtgtcctgaccgaagccgctgttgctggtaag
cgtgatgaactgcgcggtctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttatgcgtaccaccaggatcgtatgcgtcgtcgtgctgcgggcgaactgccagct
gcaccgcaggtgactgctgaagatgcatccgcgagcctggcagaactgctgaacgcaggt
ctgggcggttccgacaacgagtaa
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integrated database retrieval system
