Enterobacter pseudoroggenkampii: QVH39_01230
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Entry
QVH39_01230 CDS
T09244
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
epu
Enterobacter pseudoroggenkampii
Brite
KEGG Orthology (KO) [BR:
epu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
epu03016
]
QVH39_01230
Enzymes [BR:
epu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QVH39_01230
Transfer RNA biogenesis [BR:
epu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QVH39_01230
Prokaryotic type
tRNA splicing ligases
QVH39_01230
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
DUF8062
DUF4402
Motif
Other DBs
NCBI-ProteinID:
WJW86286
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All DBs
Position
272163..273389
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AA seq
408 aa
AA seq
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MQQNDFELLTAPNGAPIKMWTHGVPVEPEAQAQLLNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLVAGDLPDNLSGLRSAIEQAVPHGRTNTRS
RRDKGAWETPPKEVDDRWWVLAPRFKQLTDKYPQLLKTNNYQHLGTLGTGNHFIEICLDE
QQRVWVMLHSGSRGVGNAIGNVFIALAQQDMQHHLGHLPDKNLAYFQEGSRHYEDYIEAV
EWAQDFARHNREVMMSRVLAALSREVTKPFITQQEAVNCHHNYVQKEHHFGEEVLITRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEQSFCSCSHGAGRVMSRTAAKKRYTLSDHIQA
TSHVECRKDNEVIDETPMAYKDIDAVMVAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaacagaatgattttgaattactgacagcgccaaacggcgccccgatcaaaatgtgg
actcacggtgtgcccgtggagccagaggcacaagcgcagttactgaataccgcaaagatg
ccgtttattttcaaacaccttgcggtgatgcccgacgttcatctcggtaaaggctcaacc
atcggcagcgtgattccgaccaaaggggcaattattcctgcggcggttggcgtggatatt
ggttgcgggatgattgccgttcgcacgtcgctggtggccggtgatttgccggataatctc
agcggtttacgtagcgccattgaacaggcagtaccgcatgggagaaccaatacgcgttct
cgacgtgataaaggcgcgtgggaaacgccaccgaaagaagtggacgatcgctggtgggtg
ctggccccacgttttaaacaactcacggataaatacccgcagttgctgaaaaccaacaac
tatcagcatctgggcacgctgggtaccggaaaccactttattgaaatttgcctcgatgag
cagcagcgcgtctgggtgatgttgcacagtggctcgcgcggcgtaggaaacgccatcggt
aatgtgtttatcgccctggcacagcaggatatgcagcatcacctgggacatctgccggat
aaaaatctggcctattttcaggaggggagtcgtcactatgaggactacatcgaggcggtg
gagtgggcgcaggattttgcccgccacaatcgggaagtgatgatgtcgcgcgtgctggcg
gcgctctctcgcgaagtgactaagccctttattacgcagcaggaggcggttaactgccat
cataactatgtgcagaaagagcatcactttggggaagaggtactgatcacgcgcaaaggt
gcggtgtcggcgcagaaagggcagatggggattattccgggctcaatgggcgcaaagagc
ttcatcgtgcgtggcctcggcaacgagcaaagcttctgttcctgcagccacggcgctggg
cgagtgatgagccgaacggcggcaaaaaaacgctatacccttagcgaccatattcaggcg
acctctcacgtagagtgtcgcaaagacaatgaggtgatcgatgaaacgccgatggcctat
aaagacattgatgccgtgatggtcgcgcaatcgtcgctggtggagatcgttcacaccctg
cgtcaggtcgtgtgtgtaaaaggataa
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