Enterobacter pseudoroggenkampii: QVH39_08675
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Entry
QVH39_08675 CDS
T09244
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
epu
Enterobacter pseudoroggenkampii
Pathway
epu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
epu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QVH39_08675 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
epu03019
]
QVH39_08675 (rne)
03009 Ribosome biogenesis [BR:
epu03009
]
QVH39_08675 (rne)
Enzymes [BR:
epu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QVH39_08675 (rne)
Messenger RNA biogenesis [BR:
epu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QVH39_08675 (rne)
Ribosome biogenesis [BR:
epu03009
]
Prokaryotic type
rRNA processing factors
QVH39_08675 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
WJW87668
LinkDB
All DBs
Position
complement(1817096..1820212)
Genome browser
AA seq
1038 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDQME
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
AALEKPAAKPEAQKPAAAAKTQPAQPGLLSRFFGALKKMFAEEEAQPEQPKEEPKAAKPE
RQQDRRKRQNNRRDRNDRSDRNDRSERRDNRDNRSENNEGREQREDNRRNRREKQQQNVE
DREIRQQAGDESEKSKQRDDQQPRRERNRRRNDEKRQAQQEVKNLNREEPVEQQDGEQEE
RTQVMPRRKQRQLAQKVRFASEATEESTVVAVETRENATGTQLAKVDLPAVVENNVEQDE
NGENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTIACASPEMASGKVWI
RYPVARPEQVVEEQPVTEEVIAPAAAVEDVVTEAATVVEPQVVETEAPQAVEVETTHPEV
IAAPVDAAPQLIAEEDVVVAEEVAEEAEPVAAVEDTTEAIVETTAEEVVQDVEIEVEPVV
EEPKAPEVKPEPVVSAPAAAHVATAPMTRAPAPDYVPEAPRHSDWVRPAFSFDGKGAAGG
HSATHQATAPATRPQSVE
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggtaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcatggtttcctccctctgaaagaaatcgcccgcgaatatttccctgca
aactacaacgcccatggccgaccaaacatcaaagatgttctgcgtgaaggtcaggaagtt
atcgttcagattgataaagaagagcgtggcaacaaaggtgccgcactgaccacctttatc
agcctggcagggagctatctggtgctgatgcctaacaacccgcgtgcgggtggcatctct
cgccgtatcgaaggtgatgaccgtaccgagctgaaagaagcgctggcaagcctcgaactg
cctgatggcatgggtcttatcgtgcgtaccgcaggcgtgggcaaatcagccgaagcgctg
caatgggacctgagcttccgtctgaagcactgggaagccatccagaaagcagcggaaagc
cgccctgctccgttcctgatccaccaggaaagcaacgtgatcgtgcgtgccttccgtgac
tatctgcgtcaggacatcggtgagattctgatcgataacccgaaagtgcttgagctggcg
cgccagcacatcgccgcactgggtcgtccggatttcaccagcaaaattaaactgtacacc
ggtgaaatcccgctgttcagccactatcagatcgaatcccagattgaatccgccttccag
cgtgaagtgcgtctgccgtccggcggttctatcgttatcgataccactgaagcgctgacc
gctatcgacatcaactccgcgcgtgcaactcgcggcggcgatatcgaagagaccgccttc
aacaccaaccttgaagccgctgatgaaatcgcccgccagctccgcctgcgcgacctgggt
ggtctgattgttatcgacttcatcgacatgacccctgttcgccaccagcgtgcggtagaa
aaccgtctgcgcgaagcggtgcgtcaggacagagcgcgtatccagattagccatatctca
cgctttggcctgctggagatgtcccgtcagcgcctgagcccgtcgctgggtgagtccagc
catcacgtttgccctcgctgctccggcaccggtaccgtgcgtgataacgaatcgctgtcc
ctctctatcttgcgtctgattgaagaagaagcgctgaaagagaataccaaagaggtgcac
gcgattgttcctgtgccaattgcctcctacctgctgaacgaaaaacgtgctgcggtaagt
gctattgaagcgcgtcagggcggcgttcgctgcatcatcgtgccaaacgaccagatggaa
actccgcactatcacgtgctgcgtgtccgtaaaggcgaagagacgtccacgctcagctac
ctgctgccgaagctgcacgaagaagagatggccctgccttccgatgaagagccagccgag
cgcaaactgcctgagcagcctgcgttagcgacctttatcatgccagaagccccaccggaa
gcggccctggaaaaacctgcggctaaacctgaagcgcagaaaccagcagcagcagcgaaa
acccagccggcgcagccgggtctgctgagccgcttctttggcgcgctgaagaagatgttt
gctgaagaagaagctcagccagaacagccgaaggaagagccaaaagcggccaagcctgaa
cgccagcaggaccgccgtaagcgtcagaacaaccgccgcgatcgtaacgaccgtagcgat
cgtaatgaccgcagcgagcgtcgtgacaaccgcgacaaccgttctgaaaataacgaaggt
cgtgagcaacgcgaagacaaccgtcgcaaccgtcgcgagaaacagcagcagaatgttgaa
gatcgtgaaattcgccagcaggcgggcgatgagtctgagaaaagcaaacagcgtgacgac
cagcagccgcgccgtgaacgcaaccgtcgccgtaacgacgagaagcgtcaggcacagcag
gaagtcaaaaacctgaaccgcgaagagcctgttgaacagcaggacggcgagcaggaagaa
cgtactcaggttatgccgcgccgtaagcagcgccagcttgctcagaaagtccgcttcgcc
tcagaagcaaccgaagagtcaaccgttgtcgcagttgaaacccgcgagaacgcaaccggc
acgcagctggcgaaagttgatctgccagcggtcgttgaaaacaacgttgagcaggatgaa
aacggtgaaaaccgtgataacgcaggaatgccgcgccgttcacgccgttccccacgtcat
ctgcgcgtcagcggccagcgccgtcgtcgctatcgtgacgagcgttacccaactcagtcg
ccaatgccgctgaccattgcctgtgcttcgccagaaatggcttccggcaaagtctggatc
cgctacccggtagcgcgtccggagcaggttgttgaagaacagcctgtaaccgaagaggtg
attgcacctgcggcagcggtagaagacgttgtgactgaagcggcaaccgtggttgaacct
caggttgttgaaacggaagcacctcaggcagttgaagtcgaaaccactcatccggaagta
attgccgcgccggttgatgccgcaccgcagcttattgctgaagaagatgtcgtggtggct
gaggaagttgctgaagaagctgaacctgtagccgcagtggaagacaccactgaagctatc
gttgaaaccaccgctgaagaagtcgttcaggacgttgagattgaggttgaaccggttgtt
gaagaaccgaaagcgcctgaagtgaaacctgaaccggttgtctctgcgccagccgctgcc
cacgtggcgacagcaccgatgacccgcgctccggcgccggattacgtgccagaagcaccg
cgtcacagcgactgggttcgtccggcgttcagcttcgacggcaaaggcgctgctggcggc
cacagtgcaacgcatcaggcgactgcaccggcaacgcgcccgcagtctgtcgaataa
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