Enterobacter pseudoroggenkampii: QVH39_10965
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Entry
QVH39_10965 CDS
T09244
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
epu
Enterobacter pseudoroggenkampii
Brite
KEGG Orthology (KO) [BR:
epu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
epu03019
]
QVH39_10965 (hrpA)
Enzymes [BR:
epu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QVH39_10965 (hrpA)
Messenger RNA biogenesis [BR:
epu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QVH39_10965 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
T2SSE
nSTAND3
NACHT
ResIII
AAA_16
SLFN-g3_helicase
PhoH
NTPase_1
AAA_23
Motif
Other DBs
NCBI-ProteinID:
WJW88103
LinkDB
All DBs
Position
2278506..2282408
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKFTFPMLLQQLDSLTLRDKQRFARRLHGVKKVKNPDAQQAIYQEMAKEIEQAAGK
VVLREAARPAITYPENLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSKH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGNESAGDILIFMSGE
REIRDTADALSKRDLRHTEILPLYARLSNSEQNRVFQPHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRVDFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREVHIALLTGLLSHIGMKDAEKQEYTGARNARFSIFPGSGL
FRKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLLKRSYSEPHWERAQGAVMATE
KVTVYGLPVVAARKVNYSQIDPALSRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDEALFEFYDQRISHDVISARHFDSWWKKASKETPDLLNFEKSMLIKEGA
ESVSKLDYPNFWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALEREFRRMTGTTIDRDDW
NWDQVPDHLKISFRVVDDKNKKLLEGRSLSELKEALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPQEQQQMMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIHEAGGPVWTEEGFAQLHEK
VRAELNDTVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDVKAQMAGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKMAIDPHRDRAQMLKVESVQQAWQQWLNKLPPARRDDED
VHAIRWMIEELRVSFFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattcaccttcccgatgctcctgcaacagctcgattctctgacg
ctgcgcgacaaacagcgcttcgcccgccgtctgcacggcgtcaagaaggttaaaaatcct
gatgcacaacaggccatttaccaggagatggcgaaagagattgaacaggctgcagggaaa
gttgtgctgcgcgaagccgcacgtccggcgattacctacccggaaaacctgcccgtcagc
cagaagaaacaggacattctcgaggccgtacgcgaccaccaggtggtgattgtcgcgggg
gaaaccggttcggggaaaaccacccagctgccgaaaatctgtatggagctgggccgcggg
atcaaaggcctgattggccacacccagccgcgtcgtctggcggcgcgcaccgttgccaac
cgtattgccgaagagctgcagacggagccgggcggctgcatcggctacaaggtgcgcttc
agcgaccacgttagcgataacaccatggtcaagctgatgaccgacggtattctgctggcg
gaaatccagcaggatcgcctgctgatgcagtacgacaccatcatcattgacgaagcgcac
gagcgtagcctgaacattgatttcctgctcggctacctgaaagagctgctgccgcgtcgc
ccggatctgaaagttatcatcacctccgcgaccatcgacccggagcgcttctcgaagcac
ttcaacaatgcgccgattatcgaagtctctggtcgtacctatccggtcgaggtgcgctat
cgcccgattgttgaagaggcggacgataccgagcgcgaccagctgcaggccatcttcgat
gccgtcgacgagctgggtaacgaaagcgcgggcgacattctgatcttcatgagcggcgag
cgtgaaattcgcgataccgccgatgcgctcagcaagcgcgacctgcgccacaccgagatc
ctgccgctgtatgcccgcctgtccaatagcgaacagaaccgcgtattccagccgcacagc
ggacgccgcatcgtcctggcgaccaacgtggcggaaacctcgctgaccgtaccgggcatt
aaatatgtgatcgatccgggtacggcgcgcatcagccgctacagctaccgtaccaaggtt
cagcggctgccgattgagcccgtttcgcaggcgtctgctaaccagcgtaagggccgctgt
ggccgcgtgtcggaagggatctgtattcgtctctattccgaagacgatttcctgtcgcgt
ccggaatttaccgacccggaaattctgcgcaccaacctggcgtccgttatcctgcagatg
accgccctggggctgggcgacatcgcggcgtttccgttcgtcgaagcgccggataaacgc
aacatccaggacggcgtgcgtctgctggaagagctcggggcgatcaccaccgacgagcag
gcgacggtctacaagctgacaccgctgggccgccagctcagccagctgccggtcgacccg
cgtctggcacgcatggtgctggaagcgcaaaagcacggctgcgtgcgcgaggcgatgatc
attacctcggcgctctccattcaggatccgcgcgagcgtccgatggacaaacagcaggcg
tcagacgaaaagcaccgccgcttccacgacaaagagtccgatttcctcgcctttgtgaac
ctgtggaactacctcggcgagcagcagaaggcgctctcctcgaatcagttccgccgccag
tgccgcgtagatttcctcaactacctgcgcgtgcgcgagtggcaggatatctacacccag
ctgcgccaggtggtgaaagagctgggtattccggtcaacagcgaaccggcggagtaccgc
gaagttcatatcgcgctgctgaccggcctgctgtcccacattgggatgaaggacgccgag
aagcaggagtataccggcgcgcgtaacgcccgtttctcaatcttccccggttccggcttg
ttcaggaagccgccgaaatggaccatggtcgcggagctggtggaaaccagccgcctgtgg
ggacgcattgccgcgcgtatcgatccggaatgggtggagccggtggcgcagcatctgctg
aagcgctcgtacagtgaaccgcactgggagcgcgcgcagggcgcggtgatggcgaccgag
aaagtgaccgtttacggcctgccggtggtcgccgcgcgtaaggtcaactacagccagatc
gatccggcgctcagtcgcgagctgtttatccgccacgcgctggtggagggcgactggcag
acgcgccacgccttcttccgtgaaaacctgaagctgcgcgccgaagtggaggagctggag
cacaagtcccgccgccgtgacattctggtggacgatgaggcgctgtttgagttttacgac
cagcgcatcagccacgatgtgatttccgcccgccacttcgacagctggtggaagaaggcc
agcaaagagacgccggacctgctcaactttgaaaagagcatgctgattaaagagggcgcg
gagtcggtcagcaaactcgactacccgaacttctggcatcagggcaacctcaagctgcgt
ctgacctatcagtttgagccgggggcagacgcggacggcgtgaccgtccacattccgctg
ccgctgttaaaccaggtggatgagagcgggttcgagtggcaaatccccggcctgcgccgc
gagctggtgattgcgctgatcaaatccctgccgaaaccggtgcgccgcaactttgtgcct
gcgccaaactacgcggaagcgtttttgggccgcgtcacgccgctggagctgccgctgctg
gacgcgctggagcgtgagttccgccgtatgaccggaacgaccatcgaccgcgacgactgg
aactgggatcaggtgcccgatcacctgaaaatcagcttccgcgtggtggacgataaaaat
aaaaagctgctggaagggcgttccctgagcgagctgaaagaggcgctgaaaggcaaagtc
caggagacgctctctgcggtggcggacgacggcatcgagcagagcgggctgcacatctgg
agctttggtcagcttccggaaagctacgagcagaagcgcggcaactataaggtgaaagcc
tggcctgcgctggtggacgagcgcgacagcgtggcgatcaaactgtttgataacccgcag
gaacagcagcagatgatgtggcgcgggctgcgtcgtctgctgctgctcaacatcccgtcg
ccgatcaagtatctgcacgagaagctgccgaacaaagccaagctggggctgtactttaac
ccgtacggcaaggtgctggatctgattgacgactgcatctcctgcggcgtggacaagctg
atccatgaggcgggcggcccggtctggacggaagagggctttgcacagcttcatgaaaag
gtgcgcgcggagctgaacgacaccgtggtggagattgccaaacaggtcgagcagatcctc
accgccgtgttcaatatcaacaagcgcctgaaggggcgcgtggatatgaccatggcgctg
gggctctcggacgtgaaggcgcagatggcggggctggtctatcgcggctttgtcaccggc
aacggctttaagcgcctgggcgatacgctgcgctatctgcaggcgattgaaaaacgtctg
gaaaaaatggctatcgacccgcaccgcgatcgcgcgcagatgctgaaagtggaaagcgtg
cagcaggcgtggcagcagtggctcaacaagctgccgccagcgcgccgcgacgatgaagac
gtgcatgcgatccgctggatgattgaggagctgcgcgtcagcttctttgcccagcagctc
ggtacgccgtatccgatttcggacaagcgtattctgcaggcgatggagcagatttccggt
taa
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