Erwinia pyrifoliae Ep1/96: EpC_01840
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Entry
EpC_01840 CDS
T01000
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
epy
Erwinia pyrifoliae Ep1/96
Pathway
epy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
epy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EpC_01840 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
epy03021
]
EpC_01840 (rho)
03019 Messenger RNA biogenesis [BR:
epy03019
]
EpC_01840 (rho)
Transcription machinery [BR:
epy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EpC_01840 (rho)
Messenger RNA biogenesis [BR:
epy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EpC_01840 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
CAX53942
LinkDB
All DBs
Position
212788..214047
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSDLITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaaaaatacgccggtttctgacctgataactctcggcgaaaat
atggggctggaaaacctggcccgtatgcgtaaacaggacattattttcgccatcctcaag
caacatgctaaaagcggcgaagatatcttcggcgatggcgtgctggaaatattgcaggat
ggatttggtttcctccgctccggcgacagctcttacctcgctggccccgatgatatctac
gtttcccccagccaaattcgccgctttaaccttcgcacgggtgacaccatctctggcaag
atccgtccgccaaaagagggagagcgttactttgcgctgctgaaggttaacgaggttaac
tatgacaaaccggaaaatgcgcgcaataaaatcctgtttgaaaacctaacgccgctgcac
gctaactcacgtctgcgcatggagcggggtaacggttctaccgaagacttgaccgcacgc
gtgctggatttggcttcgccgattggtcgcggtcagcgtggcttgattgtcgccccgccg
aaagcgggtaaaaccatgctgctgcaaaatattgcgcagagtattgcttacaaccatcct
gactgcgtgctgatggtgttgctgattgacgagcgccctgaagaagtgacggagatgcag
cgtctggtcaaaggggaagttatcgcttctacctttgatgaacctgcatcacgtcacgtt
caggtcgctgaaatggtgatcgagaaggctaagcgcctggtcgagcacaaaaaagacgtc
atcatcctgctggactctatcactcgcctggcgcgtgcctataacaccgtggttcctgcc
tctggcaaggtactgaccggtggtgtggatgccaatgccctgcaccgtccaaagcgtttc
tttggcgctgcacgtaacgttgaagagggcggcagcctgaccattatcgctaccgcgctg
gtggataccggttcgaagatggatgaagtgatctacgaagaattcaaaggtacaggtaat
atggaactgcatctggcgcgtaaaatcgccgagaaacgcgtgttccctgctatcgattac
aatcgctccggtacgcgtaaggaagagttgctgacgacgtcggaagagctgcaaaaaatg
tggattctgcgtaagatcattcacccaatgggcgaaattgatgcgatggagttcctgatt
aataagttggcgatgaccaaaaccaacgatgaattcttcgatatgatgaaacgttcataa
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