Erwinia pyrifoliae Ep1/96: EpC_07170
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Entry
EpC_07170 CDS
T01000
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
epy
Erwinia pyrifoliae Ep1/96
Brite
KEGG Orthology (KO) [BR:
epy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
epy03021
]
EpC_07170 (rapA)
Transcription machinery [BR:
epy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
EpC_07170 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
AAA_34
COG2_N
Motif
Other DBs
NCBI-ProteinID:
CAX54496
LinkDB
All DBs
Position
complement(833343..836249)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVDTRMVTLLFPATGENRLYARNDSPITRVVFNPGDT
ITSHEGWQLEVDEVTTTTGVVSYIGTRLDTSETGVVLREVMLDSKLVFGKPQDRLFAGQL
DRMDRFALRFRARKYQSEQYRLATSGLRGMRTSLIPHQLHIAHDVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQLLAGRAERVLIVVPETLQHQWLVEMLRRFNLRFALFDDDRYAQAQL
DSDNPFDTEQMIICSLDFVRRNKQRLEKLADAEWDLMVVDEAHHLVWSEDAPSREYQVIE
QLAEQIPGILLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKHFRPIADAVTMLL
ADQKIGNDELNLLNDLMGEQDIEPLLQTANSDREGKLAARQELIGMLMDRHGTSRVLFRN
TRNGVKGFPKRELHQIRLPLPTQYQTAIKVSGIMSARKTADERAQDMLYPEQIYQEFEGD
SGTWWNFDPRVEWLMGYLTSNRDKKVLVICAKAATALQLEQVLREREGIRAAVFHEGLSI
IERDRAAAWFASEEDGAQVLLCSEIGSEGRNFQFASQMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQAVLVQWYHEGLDAFEHTCPTGRAVYDSVYAQLIAYLAAPENS
EGLEAFIRQCRKQHDALKAQLEQGRDRLLELNSNGGEKGQALADMIAEQDNHIELVNFAL
NLFDIVGINQEDRSDNLIVLTPGDHMLVPDFPGLPEDGCTITFDRNQALSREDAQYVSWE
HPIIRNGLDLILSGDTGSCAISLLKNKALPVGTLLVELIYVVEAQAPKHLQLTRFLPPTP
IRMLIDRKGTNLAAKVEFESFNRQLNAVNRHTGSKLVNAVQSDVHEIITLSEDQAAEEAR
KVIDAARQEADEKLSAELSRLQALSAVNPNIRQDEIDALESNRQQVLSNLDEAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggataagcgatacggaaagcgaactgggactggga
accgtggttgccgtcgatacgcgcatggtcaccctgctgttccctgctacgggcgaaaac
cgtctctatgccagaaatgattctcccatcactcgcgtcgtgtttaatcccggcgatacc
atcaccagccatgaaggctggcagctggaggttgacgaggtcaccaccaccaccggggtg
gtcagttatatcggtacccggctggacactagcgaaacgggcgtggtgctgcgtgaagtg
atgctggacagcaagctggtgttcggcaaacctcaggatcgcctgtttgccgggcagctg
gaccgcatggatcgcttcgccctgcgttttcgcgcgcgtaaataccagagcgagcagtat
cgcctggccaccagcggcctgcgcggtatgcgtaccagcctgatccctcaccagctgcac
atcgcccacgatgtcggccgccgccatgcgccgcgcgtgctgctggcggatgaagtgggc
ttaggtaaaaccattgaagccgggatgatcattcatcagcagctgctggccggccgcgcc
gagcgcgtgctgatcgtggtgccggaaacgctgcagcaccagtggctggtcgaaatgctg
cgccgctttaatctgcgttttgcgctgtttgacgacgaccgttacgcacaggcacagctc
gacagcgacaacccgtttgataccgagcagatgataatctgttcgctggactttgtgcgc
cgcaacaaacagcgcctggaaaagctggccgatgccgagtgggatttgatggtggtggat
gaagcgcatcacctcgtctggtccgaagacgcgccgagccgcgaataccaggttatcgaa
cagttggccgaacagatccccggcatcctgctgctgactgccaccccagaacagctgggg
atggagagccatttcgcgcgtctgcgtctgctggatcctaaccgtttccacgattttgcc
cagtttgttgaagaacaaaagcacttcagaccgattgccgatgcggtgacgatgctgctg
gccgaccagaaaataggcaacgatgagctgaacctgcttaacgacctgatgggtgaacag
gatatagagccgctgctgcaaaccgctaatagcgaccgcgaaggtaagctggcagcgcgt
caggagctgatcggcatgctaatggaccgtcacggtaccagccgcgtgctgttccgtaac
acccgtaacggcgtgaagggcttcccgaaacgcgaactgcatcagatccgtctgccgctg
ccgacgcagtaccagacggccattaaagtgtccggcattatgagcgcccgtaaaaccgcc
gacgagcgcgcacaggatatgctctacccggagcagatttatcaggagtttgagggcgac
agcggcacctggtggaacttcgacccgcgcgtcgaatggctgatgggctatctgaccagc
aaccgtgacaaaaaggtactggtgatctgcgccaaagccgccaccgccctgcagctggag
caggtactgcgcgagcgcgaaggcattcgtgccgccgtgttccatgaagggctgtcgatc
attgagcgcgatcgtgctgcagcatggttcgcttcggaggaggatggcgctcaggttctg
ctgtgctcggagatcggttctgaagggcgtaacttccagttcgccagccagatggtgatg
ttcgacctgccgtttaaccccgacctgctggaacagcgtattggccgtctggaccgtatc
ggtcaggcgcacgatattcagatccacgttccttacctggaaaaaaccgcgcaggcggtg
ctggtgcagtggtatcacgaggggctggatgccttcgaacacacctgcccgaccgggcgg
gcggtctacgacagcgtttatgctcagcttatcgcatacctcgccgcgccggaaaacagc
gaaggcctggaggcgtttatccggcagtgccgcaagcagcacgatgcgttaaaggcgcag
ctggagcaggggcgtgaccgcctgctggagcttaactccaacggcggcgagaaaggccag
gcgctggcggatatgattgccgaacaggataatcatattgaactggtgaactttgcgctc
aacctgttcgatatcgtcggcattaatcaggaagatcgcagtgataacctgatcgtcctg
acgccgggcgaccatatgctggtaccggacttccccgggctaccggaagacggctgtacc
attaccttcgaccgcaaccaggcgctgtcacgcgaagatgcccagtatgtgagctgggag
cacccgatcatccgcaacgggctggatctgatcctttccggtgataccggcagctgtgcg
atttccctgctgaaaaacaaagcgctgccggtcggcaccctgctggtggagttgatttac
gtggtggaagcccaggcaccgaagcatctgcaactcacccgtttcctgccgccaacgcca
atccgcatgctgattgaccgcaaaggcaccaaccttgccgccaaagtcgagtttgagagc
ttcaaccgccagcttaacgcggtgaaccgccataccggcagcaagctggtgaatgcggtg
cagtcggacgtgcatgaaatcatcaccctgtcggaagatcaggcggccgaagaggcgcgt
aaagtgatcgacgccgcccgccaggaagccgacgagaagctgagcgccgaactgtcacgc
ctgcaggcgctgagcgcggtgaatccgaacatccgtcaggatgagatcgacgcgctggaa
agcaatcggcaacaggtgttgagcaatctcgatgaagcgggctggcgtcttgacgcgctg
cgcctgatcgtcgttacgcaccaataa
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