Erwinia pyrifoliae Ep1/96: EpC_17350
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Entry
EpC_17350 CDS
T01000
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
epy
Erwinia pyrifoliae Ep1/96
Brite
KEGG Orthology (KO) [BR:
epy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
epy03019
]
EpC_17350 (hrpA)
Enzymes [BR:
epy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EpC_17350 (hrpA)
Messenger RNA biogenesis [BR:
epy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EpC_17350 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
T2SSE
NACHT
nSTAND3
PhoH
AAA_25
TsaE
Motif
Other DBs
NCBI-ProteinID:
CAX55514
LinkDB
All DBs
Position
1968085..1971987
Genome browser
AA seq
1300 aa
AA seq
DB search
MSDTSQSVLSTLYSRLDALMLRDRQRLLRRLQSAKKIKNPTALQAVTGELSADITSAEQR
VAARQAATPSIRYPENLPVSQKKQEIADAIRASQVVIVAGETGSGKTTQLPKICLELGRG
IRGLIGHTQPRRLAARTVAERIASELELSLGGCVGYKVRFNDKVGDTTQVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLCELLPKRPDLKVIITSATIDPQRFSRH
FHNAPVIEVSGRTYPVEVRYRPVVEEADDSDRDQLQAIFDAVDELGRESRGDILIFMSGE
REIRDTADALIKRDLPHTEVLPLYARLSNAEQNRVFQSHAGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSFRTKVQRLPIEAISQASANQRKGRCGRVSEGICIRLYAEDDFLSR
PAFTDPEILRTNLASVILQMTALGLGDISAFPFVEAPDRRNIQDGVRLLEELGAITLADN
QHYRLTPSGRALAQLPVDPRLAKMVLEAQKYGCVREVMIITAALSIQDPRERPADKKQAS
DEKHQRFADKESDFIAFVNLWNWLQEQQKALSSSQFRRQCKTDYLNYLRVREWQDIYTQL
RQVVRELGLPVNSEPAALREIHTALLTGLLSHIGQKESDKQEFTGARNARFAIFPGSGLF
KKPPKWTMVAELVETSRLWGRIAARIEPEWIEPVAQHLLKRSYSEPHWEKAQGAVMASEK
VTLYGLPIVAARKVNYAPIDPVLSRELFIRHALVEGDWQTRHAFFKANLKLLAEVEELEH
KSRRRDILVDDETLFAFYDQRIGHEVVSARHFDRWWKTLSREEPDRLNFAKEMLINQGAD
NVSPLDYPNFWHQGHLKLRLSYQFEPGADADGVTVFIPLPLLNQVEDNGFEWQIPGVRRE
LVIALIKSLPKPLRRNFVPAPNYADAFLARATALELPLPESLEREFRRMSGITLERDAWQ
WEQVPDHLKITFRIVDESNRKLAEGKDLTALKAQLKSKVQETLAKVADDGLEQRGLHVWS
FGDLPDHFEQKRGNYSVKAWPALVDEQDSVAIRLFDSQHEQQKVMWRGQRRLLLLNIPSP
IKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCIACGVDKLIAESGGPSWQQQGYDRLHDKV
RAALNDTVVEIAKKVEQILTAVFNINKRLKGRVDMSMALALSDIKAQMSGLVYRGFVTGN
GWKRLGDTLRYLQAIERRLEKVAVDPHSDRARMLKVESVQQVWSSWLDKLPPQRKDDVDV
QDIRWMIEELRVSLFAQQLGTPYPISEKRILQAMEQIAVK
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacacctcacaatctgtcctgtcaacgctgtactcacggctggatgcgctgatg
ctgcgtgaccgccagcgtctcttacgccgcctgcagagtgcaaaaaaaatcaaaaacccg
actgcgttacaggcggtaaccggcgagttgagcgctgatatcaccagcgccgaacagcgg
gtggcggcccggcaagcggccacaccgtcgatacgctatccggaaaatctgccggtcagc
cagaagaagcaggaaattgccgatgccatccgagccagtcaggtggtgatcgttgccggg
gaaaccggttcgggcaaaaccacccagctgcccaagatctgcctggagctggggcgcggt
attcgcgggcttattggccatacgcagccgcgccgccttgctgcccgtaccgtggcggaa
cgcatcgcctctgaactggagctctcgctgggtggctgtgttggatataaggtgcggttt
aacgacaaagtgggtgataccacacaggtgaagctgatgaccgacggcatcctgctggcg
gaaatccagcaggatcgtctgttgatgcagtatgacaccatcattatcgatgaagcgcat
gagcgcagtctgaatatcgattttatcctcggctacttgtgtgaactgctgccgaaacgc
cccgatcttaaggtgatcattacttcggcgaccatcgacccgcagcgcttctcgcgccat
ttccacaatgcgccggtcattgaagtctccgggcgaacttatccggtggaagtgcgctat
cgtccggtggtggaagaggcagatgacagcgaccgcgaccagctacaggcgatttttgat
gcggttgatgaactggggcgtgaaagccgtggtgatatcctgatctttatgagcggcgag
cgcgaaatccgcgataccgccgatgcactcatcaagcgcgatctgccgcatacggaagtg
ctgccgctgtatgcgcgcctatcgaatgccgagcagaaccgtgtgttccagtcccacgcc
gggcggcgcatcgtgctggcaaccaacgtggcggaaacctctttaacggtgccggggatc
aaatatgtgattgatcccggcacggcgcgtatcagccgctacagtttccgcactaaggtg
cagcgcctgcctattgaagcgatttcccaggcgtcggcaaatcagcgtaaagggcgctgt
ggccgtgtctccgagggaatttgtattcgcctgtatgcggaagatgacttcctgagtcgt
cctgcttttaccgatccggaaattctgcgtactaacctggcgtcggtcattctgcaaatg
accgcacttggcctgggcgatatttctgcgtttccattcgtagaagcaccggatcggcgc
aatattcaggatggtgtgcgcctgctggaagaactgggggcgataactctcgcggataat
cagcattatcggctgacgccttccgggcgcgcgctggcacagctgccggtcgacccacgg
ctggcaaaaatggtgctggaagcacagaaatacggctgtgtgcgtgaagtgatgattatt
accgccgcgctgtcgattcaggatccgcgtgagcggcctgccgacaaaaagcaggcatcg
gatgagaaacaccagcgttttgccgataaagagtctgatttcatcgcctttgttaatctg
tggaactggctgcaagagcagcaaaaggcgctgtcatccagccagttccgccgtcagtgc
aaaacggactatctcaactacctgcgcgtgcgcgaatggcaggatatctacacccagctg
cgtcaggttgtgcgtgaactaggtttgccggtcaacagtgaaccggcggcgttgcgtgaa
atccataccgcgctactgacaggtctgctgtcgcacattggtcaaaaagagagtgataag
caagagtttaccggtgcacggaatgcccgttttgccatcttccccggatccgggctgttc
aaaaagccgccgaaatggacgatggtggccgaactggtcgaaaccagccgtctgtggggg
cgcatcgccgcgcggattgagccggaatggatcgagccggttgcgcagcacctgctaaag
cgcagctacagtgaaccgcactgggaaaaagcccagggcgcggtgatggccagtgaaaaa
gtcacgctgtacggtctgcccatcgtcgcagcgcgtaaggttaactatgctccgatcgac
ccggtgctatcgcgcgagctgtttatccgccatgcgctggttgagggggactggcagacg
cgtcatgccttcttcaaagccaacctgaagctgcttgctgaagtggaagagctggaacac
aaatcccgccgccgcgatattctggtagatgatgaaacgctgtttgcattctatgaccag
cgtattggccatgaggtggtatcggcgcgacattttgaccgctggtggaaaacgcttagc
cgggaggagcctgaccgtctgaactttgctaaagagatgctgattaatcagggggctgat
aacgtcagcccgctggattatcccaacttctggcatcaggggcatctgaagctgcggtta
agctatcagtttgaaccgggcgctgatgccgacggcgttacggtgtttatcccgctaccg
ctgcttaatcaggtggaagataacggttttgagtggcaaattcccggcgtgcgtcgcgag
ctggtgattgccttaatcaagtcgttacccaaaccgttacgccgtaactttgttccggct
cccaactatgcggatgcttttcttgcccgtgctacggcgctggagctgcctctgccagag
tcgctggagcgagagtttcgccgcatgtcgggaattaccctggaacgtgatgcgtggcag
tgggagcaggtgcccgatcatcttaaaatcacgttccgcattgtcgatgaaagcaaccgc
aagctggcggaaggcaaagacctgacggcgctcaaggcacagttaaaaagcaaggtacag
gaaacgctggcgaaggtagcggatgacggactggaacagcgcggtctgcatgtatggagc
ttcggcgacttacccgaccattttgaacaaaaacggggaaattacagcgttaaagcctgg
cccgcgctggtcgatgagcaagacagcgtagcgatccgcctgttcgattcacagcacgaa
cagcagaaggtcatgtggcgcgggcagcggcgtctgctgctgctgaacattccgtcaccg
attaaatatctgcacgagaagctgcccaacaaagccaaactggggctttacttcaaccct
tacggcaaggtgcttgacctgattgatgactgcatcgcctgtggcgtggataagctgata
gcggaatccggcggcccgagctggcagcagcagggctatgaccgactgcatgataaggta
cgggcagcgctgaatgacacggtggtggagattgctaaaaaggtcgaacagatccttact
gcggtatttaatatcaataaacgcctgaaagggcgcgtcgacatgtcgatggcgctggcg
ctgtcagacattaaagcgcaaatgagcgggctggtatatcgcggtttcgttacgggcaat
ggctggaagcggctaggggacacgttgcggtatctgcaggcgattgaacgccggctggaa
aaagtcgccgttgatcctcacagtgaccgcgcccgtatgctgaaagttgaatcagtacag
caggtctggagcagctggttggataaattgccgccgcagcgcaaagatgatgttgacgtg
caggatatccgctggatgattgaagagctgcgcgtcagcctgtttgctcagcagttaggg
acgccgtaccccatttctgaaaaacgcatcctgcaggcgatggaacaaatcgcagtgaag
tga
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