Erwinia pyrifoliae Ep1/96: EpC_21290
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Entry
EpC_21290 CDS
T01000
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
epy
Erwinia pyrifoliae Ep1/96
Pathway
epy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
epy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EpC_21290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
epy03400
]
EpC_21290 (mfd)
Enzymes [BR:
epy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EpC_21290 (mfd)
DNA repair and recombination proteins [BR:
epy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EpC_21290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
DUF6007
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAX55908
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All DBs
Position
2367418..2370864
Genome browser
AA seq
1148 aa
AA seq
DB search
MPELYRYDLPSRAGDQRQLGQLIGAACAVECAEIADRHHGPVLLIAHDMQNALRLQDEIK
QFTDQPVMALADWETLPFDGFSPHQEIISSRLSTLYQLPTLASGILILPVNTLMQRVCPH
NFLHGHALVMQKGQKLSRDKLRSQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSERPY
RIDFFDDEIDSLRLFDVDSQRTQEEVAAINLLPAHEFPTDENAIELFRSQWREHFDVRRE
AEHIYQQVSKGTLPAGIEYWQPLFFEQPLQPLFSYLPVNTLLVMSGDVESSAGRFWQDVN
ARYENRRIDPMRPLLPPASLWLRSDELFSELKQWPRIQLKADLLTAKSGNTNLDYRALPD
LAVQPQAKTPLDALRHFLESFSGPVVFSVESEGRREALQELLARIKLKPAVIHSLPQARE
PGHYLLMGASEHGFIDGLRNRALICESDLLGERVSRRRQDSRRTINPDVLIRNLAELHPG
QPVVHLEHGVGRYIGMTTLETGGIKAEYLMLSYAGDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKTGFAFKHDKQQYQLFCDSFPFE
TTVDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMMSRFRTAKEQAQVLADAQEGKVDILIGTHKLLQNDIKW
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDEMAVREAILREVLRGGQVYYLYNDVENIEKATKRLTELVPEARVAL
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADRFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EGQSGQMETIGFSLYMELLENAVDALKEGREPSLEDLTNNQTDIELRMPSLLPDDFIPDV
NTRLSFYKRIASAQHSNELDVLKVELIDRFGLLPDAARNLLGIAALRLAAKKLGVRRVEA
SEKGGFVEFAEKNKVDPAWLIGLLQREPQHWRLDGPTRIRFMRDLSERKVRIKWVSEFMN
KMVDNASA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactctaccgatatgacctgccgtccagagcaggtgaccagcgccagctgggg
caattgatcggcgcggcctgcgccgttgaatgtgccgaaatagcagacagacatcacggc
ccggttttgctgattgcccatgatatgcaaaatgcactgcgcctgcaggatgaaattaaa
cagttcaccgaccagccggtgatggcgctggccgactgggaaaccctgcccttcgacggc
ttctcgccgcatcaggagatcatttcctcgcggctttccaccctctatcagctcccgacg
ctggcatccggcattttgatcctgccggtgaatacgctgatgcagcgcgtctgcccgcac
aatttcctgcatggtcacgcgctggtgatgcagaaggggcaaaaactgtcgcgtgacaaa
ctgcgatcccagctggaacaggctggctaccgcagcgtcgatcaggtgatggagcacggc
gagttcgccacccgtggcgcattactggatctctatccgatgggcagcgaacgcccctac
cgcatcgacttttttgatgacgaaattgatagcctgcgcctgttcgatgtcgacagccag
cgcacacaggaagaggtggcggcaatcaacctgctgccggcccacgagttcccaacggat
gaaaacgccattgagctgttccgcagccagtggcgtgaacattttgacgtccgccgcgag
gccgagcatatctatcagcaggtaagtaaaggcacgctgcctgccgggattgaatactgg
cagccgctgttttttgaacagccgctgcagccactgttcagctacctgcccgtcaatacc
ctgctggtgatgtccggcgatgtggaatccagcgccgggcgtttctggcaggacgtcaac
gcgcgttatgaaaaccgtcgtatcgacccgatgcgcccgctattgccccccgcttcgctg
tggttacgcagcgatgaactattcagtgagctgaagcagtggccgcgcatccagctgaaa
gccgatctgctgaccgcgaaaagcggcaatactaacctcgattatcgagcgttgccggat
ttggcggtacagcctcaggccaaaaccccgctggacgcactgcgccactttctcgaatcc
ttcagcggcccggtggtgttttcggtggaaagcgaaggccgccgtgaagctttacaggag
ctgctggcacgcatcaagctgaagccagccgtcatccactcgctgccacaggctcgggaa
ccgggtcattacctgttaatgggtgccagtgagcatggttttattgacggattgcgcaac
cgcgcgctgatctgtgaaagcgacctgctgggcgagcgcgtcagccgtcgtcgtcaggac
agtcgccgcaccatcaatccggacgtattaatccgtaaccttgccgagctgcatcccggt
cagccggtggtacatctggaacatggcgtcgggcgttatatcggcatgaccacgctggaa
accggcggcatcaaggcagaatatctgatgctgtcctatgccggggacgccaaactctac
gttcccgtatcgtcactgcatctgataagccgctatgccgggggcgcggaagagaacgct
ccgctgcataagctgggcagtgacgcctggtcgcgcgctcgccagaaggcggcggaaaaa
gtgcgcgatgtggcagctgaattgctggatatctacgcccagcgtgcagcgaaaaccggc
tttgcttttaaacatgataaacagcagtaccagctgttctgtgacagtttcccgtttgaa
accaccgtcgaccaggcacaggcgatcaatgccgtgctgagcgatatgtgccagccgctg
gcaatggatcgcctggtatgcggtgacgtaggctttggtaaaaccgaagtcgccatgcgc
gccgcatttctggcggtggaaaaccacaagcaggtggcggtgctggtgccaactaccctg
ctggcgcagcagcactacgacaacttccgcgatcgctttgccaactggccggtgcgtatt
gagatgatgtcacgcttccgtaccgctaaagaacaggcacaggtgctggctgacgcgcag
gaaggtaaggtcgatattctcatcggcacccataagctgttgcaaaatgacattaaatgg
cgcgatctcggcctgctgattgtcgatgaagagcaccgctttggcgtgcgccataaagag
cgcatcaaggcgatgcgcgctgacgtcgatattctcaccctgaccgccacgccgatccca
cgtacgctgaacatggcgatgagcggaatgcgcgatttgtcgatcatcgccacgcccccg
gcgcgtcggctggcggtgaaaaccttcgtgcgcgaatatgatgagatggcggtgcgcgaa
gccattctgcgtgaggtactgcgcggcggccaggtttactacctgtataacgatgtcgaa
aatattgagaaggcgaccaaaaggctgaccgagctggtgccggaagcccgggttgctctc
ggacacggtcaaatgcgcgaacgcgagctggaacgggtgatgaatgatttccaccaccag
cgctttaacgtgctggtgtgtaccaccattattgaaaccggtattgatattccgaccgct
aacaccatcattattgagcgcgccgaccgcttcggcctggcgcagctgcaccagctgcgt
ggccgcgttgggcgttctcaccatcaggcttatgcctggctgctgacgccgcatcccaaa
gcgatgaccaccgatgcgcataaacgtcttgaggccatcgcatcgctggaggatctgggg
gctggatttgccctcgccacgcacgatctggagatccgtggtgccggcgaattactgggt
gaaggtcagagcggccagatggaaaccatcggcttctcactgtatatggaactgttggaa
aacgccgtcgatgcgctgaaagaagggcgtgaaccttcgctggaagatctgaccaataat
cagactgatattgagctgcgtatgccgtcgctgctgccggatgattttatccccgacgtc
aatactcgcctgtctttctataagcgtattgccagcgcccagcacagcaacgaactggac
gttctcaaggtggaactgattgaccgtttcggcctgctgccggacgcagcgcgcaatctg
ctgggtatcgccgcactgcgtcttgcggcgaaaaagctgggcgtacgccgggtagaggcc
agtgagaaaggcggttttgtcgagtttgccgagaaaaacaaggttgatcccgcgtggtta
atcggccttttacagcgtgaaccgcaacactggcgtcttgatggacccacgcgcatccgg
tttatgcgtgacctgtcggaacgcaaagtgcgcataaagtgggtgagtgagtttatgaat
aagatggtagataacgccagcgcataa
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integrated database retrieval system
