Enterobacter quasiroggenkampii: OM418_02065
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Entry
OM418_02065 CDS
T09002
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
equ
Enterobacter quasiroggenkampii
Pathway
equ03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
equ00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OM418_02065 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
equ03019
]
OM418_02065 (rnr)
03016 Transfer RNA biogenesis [BR:
equ03016
]
OM418_02065 (rnr)
Enzymes [BR:
equ01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OM418_02065 (rnr)
Messenger RNA biogenesis [BR:
equ03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OM418_02065 (rnr)
Transfer RNA biogenesis [BR:
equ03016
]
Prokaryotic type
tRNA degradation factors
OM418_02065 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
WFC83037
UniProt:
A0ABY8E1K4
LinkDB
All DBs
Position
444164..446605
Genome browser
AA seq
813 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCMH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPKA
VEEQIESLREEVPEESKVGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
NKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLESISDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDDRKI
DFSLISSERAPRNVGKTERERAKKGGNGKTSGKRRQAGKKVNFEPDSAFRGEKKQKPKAA
KKEARSAKKPSAKTQKIAAATKAKRAAKKKQAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgatcctttccaggaacgcgaagccgaaaaatacgcgaatcctatccccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gctgttgaattaaacattgaaggtgaagagcaaattgaagcccttcgccgccgcctgcgc
gcgatggagcgtgacgggcaactggtctttacccgccgccagtgctacgcgctgccagaa
cgcctcgatctgctgaaagggaccgtcattggtcaccgcgatggcttcggcttcctgcgc
gtagaaggccgtaaagacgatctgtatctctcatctgaacagatgaaaatgtgcatgcac
ggcgaccaaattctggcgcagccgctaggcgccgaccgtaaaggtcgccgcgaagcgcgc
gtcgtgcgcgttctggtgccaaaaaccagccagattgtcggccgctactttaccgacgcg
ggcgtggggttcgtggtgccggacgacagccgtctgagcttcgatattctgatcccacct
gaagaggtgatgggtgcccgcatgggctttgtggtggtggtggaactcacccagcgccca
acccgtcgcaccaaagcggtaggtaaaatcgtcgaagtgctgggcgataatatgggcacc
ggcatggccgttgatatggcgctgcgcacccacgaaattccgtacatctggccgaaagcg
gttgaagagcagatcgaaagcctgcgtgaagaagtgccggaagagtccaaagtgggccgc
gtggatctccgctccctgccgctggtcacgatcgacggtgaagacgcccgtgactttgat
gacgccgtctactgcgagaaaaaacgcggtggcggctggcgtctgtgggtagcgattgca
gacgtaagctactatgttcgtccgcacaccccgctggataacgaagcgcgcagccgcggt
acctcggtctacttcccgtcgcaggttgtaccgatgctgccggaagtgctctctaacggc
ctgtgctccctgaacccgcaggttgaccgcctctgtatggtgtgcgagatgaccatctcc
aacaaagggcgcttaaccggctacaagttctacgaagcggtgatgagttcgcatgcgcgt
ctgacctataccaaggtctggcatatgttgcagggcgaccaggatctgcgcgaacagtac
gcgccgctggtcaaacacatcgaagagctgcataacctctacaaaacgctggatcaggcg
cgcgaagagcgcggcgggatctcctttgagagcgaagaggcgaagtttatcttcaacgcc
gagcgccgcattgagcgtatcgaacagacccagcgtaacgatgcgcacaagctgatcgaa
gagtgtatgattctggcgaatatctcggcggcacgcttcgtcgaaaaagccaaagaaccg
gcgctgttccgtattcacgataaaccgtcgacggaagccatcaccgcgttccgctccgtg
ctggccgaactgggcctggagctgccgggcggcaacaagccagagccgcgcgattacgcc
gagctgctggaatccattagcgatcgtcctgatgcagaaatgttgcagacgatgctgctg
cgctcaatgaagcaggcgatttacgatccggaaaaccgcggtcacttcggcctggcgttg
cagtcttacgcccactttacgtcgccgatccgtcgttatcctgacctctctctgcaccgt
gcgatcaagtatctgctggcacaggagcagggacataaagggaacaccaccgaaaccggt
ggctaccactattcgatggaagagatgctgcagctgggtcagcactgctccatgaccgaa
cgccgtgccgatgaggccacccgcgacgtggcggactggctgaagtgtgactttatgctg
gaccaggtgggtaacgtcttcaaaggcgtgattgccagcgtgaccggctttggcttcttc
gttcgtctggatgagctgtttatcgacggtctggtgcacgtctccagcctggataacgac
tactaccgcttcgaccaggtcggccagcgtctgatcggcgaatctggcggccagacctat
cgtctgggcgaccgtgtggaagtgaaggttgaggccgtgaatatggacgaccgtaaaatc
gacttcagcctgatctccagcgagcgcgccccgcgtaacgtcggtaaaaccgagcgcgaa
agagcgaaaaaaggcggaaacggcaaaacgagcggcaagcgccgtcaggccggtaagaag
gtgaacttcgagccggacagcgcgttccgcggcgagaagaagcagaagccgaaggcggcg
aagaaagaagcccgttcagcgaagaaaccttccgcgaagacacagaaaatagcggccgcc
accaaagcgaagcgcgcggctaagaaaaagcaggcggagtaa
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