Enterobacter quasiroggenkampii: OM418_08360
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Entry
OM418_08360 CDS
T09002
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
equ
Enterobacter quasiroggenkampii
Pathway
equ03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
equ00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OM418_08360 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
equ03400
]
OM418_08360 (mfd)
Enzymes [BR:
equ01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OM418_08360 (mfd)
DNA repair and recombination proteins [BR:
equ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OM418_08360 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
HTH_53
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WFC84210
LinkDB
All DBs
Position
complement(1782190..1785636)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIR
QFTDNLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPALFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPD
LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKLAPKRILRLSEATG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKRENELEEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMR
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacactatcgttattccttgcctgtcaaagcgggcgaccagcgccagctgggt
gaactcacgggcgcagcgtgcgccacgctggtagcggaaatcgccgagcgtcatcctggc
ccggtgatcctggttgccccggacatgcaaaacgccctgcgcctgcacgacgaaattcgc
cagttcaccgataatctggtgttcagcctggccgactgggaaacgctgccctatgacagc
ttctctccgcaccaggagatcatctcctcgcgcctgtcgacgctctatcaactcccgacc
atgcagcgcggcgtgctgattgtgccggtgaataccctgatgcagcgcgtctgtccgcac
agctatctgcacggtcacgcgctggtgatgaaaaaaggccagcgcctgtcccgagatgcc
ctgcgggcgcagcttgacggtgccggctatcgccacgtcgaccaggtgatggagcacggg
gaatacgcgacccgcggcgcgctgctcgacctttacccgatgggtagcgaccagccgtat
cgtctggactttttcgatgatgaaatcgacagcctgcgcgtctttgacgccgacacgcag
cgcacgctggaggaagtggagtccatcaatttactgcccgcacatgagttcccgacggac
aaaaccgctatcgaactgttccgtagccagtggcgcgataagttcgaggtgaagcgcgac
gcggaacatatttatcagcaggtcagtaaaggcacgctgcctgcagggatcgaatactgg
cagccgctgttcttcagcgagccgctccctgccctgttcagctacttcccggcgaatacc
ctgattgttaacaccggggatatcgacgccagcgccagccgctttgaaagcgaaacccgc
gctcgcttcgaaaaccggggcgttgacccgatgcgtccgctgctgccgccggaagcgctg
tggctgcgtaccgacgagctcaacgccgaactgaagcgctggccgcgcatgcagctgaaa
accgattcgcttgccgataaggccgccaacaccaacctcgccttccggacgctgccggac
ctggccgtccaggcgcagcagaaatccccgctggataatctgcgcaagttcctggagtcg
tttaccggcccggtggtgttctccgttgagagtgaaggccgccgcgaagcgttaggtgag
ctgctgggacgcattaagttggcgccgaagcgcatcctgcgcctgagcgaagcgaccgga
aacggccgttacctgatgattggcgccgccgagcatgggttcatcgacacgctaaacaac
ctggcgctgatttgcgaaagcgacctgctgggcgagcgcgtcgcgcgccgtcgtcaggac
agccgtcgaaccatcaacccggacacgctgatccgcaacctggccgaactgcatccgggc
cagccgattgttcacctggagcatggcgttggacgctatcaggggatgaccacgctggag
gcgggcggcatcaaaggtgaatacctgatgctgacctacgccaacgacgccaaactgtat
gtcccggtgtcgtccctgcatctgatcagccgctacgcgggcggggccgaagagaacgcg
ccgctgcacaagctgggcggcgatgcctgggcgcgcgcgcgccagaaggccgcggaaaaa
gtgcgcgacgtggccgccgaactgctggatatctacgcccagcgcgcggccaaagagggc
ttcgcctttaagcatgataaggaacagtatcagctgttctgcgacagcttcccgtttgaa
accacgccggatcaggctcaggccatcaacgccgtgctgagcgacatgtgccagccgctg
gcaatggaccgtttagtgtgcggcgacgtcggcttcggtaaaaccgaagtggcgatgcgc
gccgctttccttgcggtggaaaacaacaagcaggtggcggtgctggtgccgaccaccctg
ctcgctcagcagcacttcgacaacttccgcgaccgcttcgccaactggccggtacgcatc
gagatgctgtcgcgttttcgcagcaccaaagagcagacgcagatcctggagcaggcaagc
gaaggcaagatcgatattctgatcggcacccataagctgctgcaaagcgacgtgaagtgg
aaagatttggggctgctgattgtcgacgaagagcaccgcttcggggtgcgccataaagag
cgcatcaaagcgatgcgtgccgacgtcgacatcctgaccctgaccgcaacgccgatcccg
agaaccctgaacatggcgatgagcggcatgcgcgatctgtcgattatcgccacgccgccg
gcgcgccgtctggcggtgaaaaccttcgtccgcgagtacgataatctggtggtgcgtgag
gccattctgcgtgaagtgctacgcgggggtcaggtctattacctgtacaacgacgtggaa
aacatccagaaagcggccgacaggctggcggagctggtgccggaggcgcgcatcgctatc
ggtcacgggcagatgcgcgagcgcgagctggaacgggtgatgaacgacttccaccaccag
cgctttaacgtgctggtgtgcaccaccatcatcgaaaccgggatcgacattccgaccgcg
aacaccatcatcattgaacgtgcggatcactttggcctggcgcagcttcaccagctgcgc
ggccgcgtcgggcgttcgcaccatcaggcttacgcatggctgctgacgccgcatccaaaa
gcgatgaccaccgacgcgcaaaagcgtctggaagccatcgcctctctggaagacctcggt
gcaggcttcgcactggccacgcacgatctcgagatccgcggtgccggtgaactgctgggt
gaggaccagagcggctcgatggagaccatcggcttctcgctctatatggaactgctggaa
aacgcggttgatgccctgaaggccgggcgcgagccgtcgctggaagatctcaccagccag
cagaccgaggtcgagttgcgcatgccttccctgctgccggacgatttcattccggacgtg
aatacccgactgtcgttctacaagcgcatcgccagtgcgaagagggaaaacgagctggaa
gagattaaggttgagctgatcgaccgctttggtctgctgcccgatgcggcgcgaaatctg
ctggatatcgctcgcctgcgccagcaggcgcagaagctgggcattcgcaagcttgaaggc
aacgaaaaaggcggcgtgattgagttcgcggagaagaaccacgtcaacccgatgtggctc
atcggcctgctgcaaaaacagccgcagcatttccgtctggatggcccaacgcgtctgaaa
ttcacccaggaactgacggagcgcaaaacccgcatggactgggtgcgtaactttatgcgc
cagctggaagagaacgcgatcgcctga
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