Agathobacter rectalis M104/1: ERE_04690
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Entry
ERE_04690 CDS
T02588
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
era
Agathobacter rectalis M104/1
Pathway
era03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
era00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ERE_04690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
era03019
]
ERE_04690
03400 DNA repair and recombination proteins [BR:
era03400
]
ERE_04690
Enzymes [BR:
era01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ERE_04690
Messenger RNA biogenesis [BR:
era03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ERE_04690
DNA repair and recombination proteins [BR:
era03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ERE_04690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
CBK92567
LinkDB
All DBs
Position
422474..424453
Genome browser
AA seq
659 aa
AA seq
DB search
MNINQTLKQYFGYDSLRTGQRELINGILAGQDVLGIMPTGAGKSLCYQLPALMLKGITLV
ISPLISLMSDQVKALNQAGVHAAYINSSLTENQIRMALSYASQGRYKIIYVAPERLNTQR
FLDFAYNADISMLTVDEAHCISQWGQDFRPSYLEIAGFLTRLPRRPIVSAFTATATERVK
NDIVASLGLNNPVTMVTGFDRPNLFFRVVTRRGGSQKDNSIINYVKKHEDESGIIYCATK
KNVDKLYTLLNEQGISAGRYHAGLSNDERKQNQEDFTYDRIRVMVATNAFGMGIDKSNVR
YVLHYNMPQSLEYYYQEAGRAGRDGEEAECVLFFSKQDIMINKFLLQNKASAGDVASDMQ
KTANDQRKLQLMINYCETDKCLREFILSYFGDTTPCICNKCSNCVVVEDEEEETYVETGK
KRKKAAQLAGLNELGIALFEKLRSVRTGLAAEKSVPPYIICSDKTLKDMCAKLPRDKEQL
ADVYGMGEQKIQNYGEAFVTAVNSFVADNPNPSGSTTGERPQTVLSDEEAAETGSTRKKK
LPFYIEPQRLDEVELTDKSRLTELTNKINELCPADKEHKKLAASFINELLIAEGYLEEVT
EGGNKIKRVTEKGRSVGIDEEERKAKFGGSYYAITHSKQSQQVIIEMLKKHYGSIKPQE
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaacataaaccagacactcaaacaatactttggatatgacagtcttcgaacagggcaa
agggagctcataaacggcatacttgcagggcaagatgtactcggaatcatgccgacaggc
gcaggaaaatcgctgtgctaccagcttccggcgcttatgcttaaaggaattacgcttgtc
atttcgccacttatctcgcttatgtcagatcaggtcaaggctttaaaccaggcaggagtg
catgccgcctatatcaacagctcactgactgaaaaccagataaggatggcactttcatat
gcctcacagggacgctacaagataatctatgtcgctccggagcgcctcaacacgcagcgt
tttctggattttgcttacaacgcggacatatcaatgctgacagttgatgaggcacactgt
atatcgcagtggggacaggatttcagaccgagctatctggaaattgccggatttttaacg
agacttccaagacgaccgatagtcagtgcgtttacagcgaccgccacggagcgcgtgaaa
aatgatatagtggcttcgctgggacttaacaatccggttactatggtgacagggtttgac
agacctaacttgtttttcagggttgttacaagaaggggaggcagccagaaggacaacagt
atcatcaactatgtgaaaaagcatgaggacgaaagtggaataatatactgcgcaacgaaa
aagaatgtggataagctgtatactcttttaaatgagcagggcatttcggcgggccgttac
cacgcagggctttcaaatgatgaacgtaagcagaatcaggaggattttacatacgacaga
atccgtgtgatggttgccacaaacgcatttggaatgggaatagacaagtcaaatgtgaga
tatgtgctgcattacaacatgccacagagcctcgagtattactatcaggaggccggaaga
gcggggcgagacggtgaggaagcggaatgtgtgctgtttttctcaaagcaggatatcatg
ataaacaagttccttctgcagaataaggcttcagcaggtgatgtggcatccgacatgcaa
aagacagccaatgaccaaagaaagctgcagctgatgataaattactgcgagacggacaaa
tgcctgagagagtttatactttcatatttcggagacacaacgccatgcatctgcaacaaa
tgcagcaactgtgtggttgtggaggatgaagaggaggagacatacgttgaaaccggcaaa
aagcgcaaaaaggcagcacagcttgcagggcttaacgagcttggtattgcgctgtttgaa
aagctgcgcagcgtgcgtacagggctggctgcagaaaagtcggtgcctccgtatatcatc
tgctccgacaagaccttaaaggatatgtgcgcaaagctgccgcgggataaggaacagctt
gccgatgtgtacggaatgggtgagcagaagatacaaaattatggtgaagcgtttgtgacg
gcggtaaattcatttgttgcagataacccaaatccatcaggtagcacgaccggtgaaaga
ccacagactgttttaagcgatgaggaggctgctgaaaccggcagcacgagaaaaaagaag
cttccgttttacatcgagccacagaggcttgatgaggtagagctcactgacaaaagcagg
cttacagagcttacgaacaaaataaatgagctgtgccctgctgataaggagcacaaaaag
cttgcagcctcatttataaacgagcttctcattgcggagggctatctggaggaagttaca
gaaggcgggaacaagataaagcgtgtcaccgaaaagggacgaagcgtagggatagatgag
gaagagcgcaaggcaaaatttggtggaagctattacgctatcacccattcgaagcagagc
cagcaggtgataatagaaatgctgaaaaaacactatggcagcattaaaccacaggagtaa
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