Agathobacter rectalis M104/1: ERE_06370
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Entry
ERE_06370 CDS
T02588
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
era
Agathobacter rectalis M104/1
Pathway
era02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
era00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ERE_06370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
era03021
]
ERE_06370
Transcription machinery [BR:
era03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ERE_06370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Sigma70_r4_2
WHD_MCM8
Exonuc_VII_L
RSF
IF2_N
Motif
Other DBs
NCBI-ProteinID:
CBK92716
LinkDB
All DBs
Position
complement(611688..612944)
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AA seq
418 aa
AA seq
DB search
MAKKKEQKDMAQEQEQRLNFQQKLIEILELGKKKKNMLEYQEIADFFKDLNLDPEKFEMV
IDYLEQNGIDVLKISNDDDVDDDIILDDEDEVEVEKIDLSVPEGVSVEDPVRMYLKEIGK
VPLLSADEEIELAQNMEDGAVATEKINVLKGRIDGASEEEKAEIKEEIKTLQRDVDKGAD
AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYKKGYKFSTYATWW
IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAKEMNMPVERV
REILKISQEPVSLETPIGEEEDSHLGDFIKDDNVPVPADAAAFTLLKEQLEEVLGTLTER
EQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYLE
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaaaggaacaaaaagacatggcacaggagcaggagcagagactgaatttc
cagcagaagcttattgagattcttgagcttggaaaaaagaaaaagaatatgctcgaatat
caggaaattgcagattttttcaaggacttaaatctggatccggagaagtttgagatggta
attgattatctcgagcaaaacggcatagacgtgcttaaaatcagcaatgatgatgacgtg
gatgatgatatcatactcgatgatgaggacgaggtagaggttgaaaagattgatctctca
gtaccggagggagtcagcgtcgaggatcctgtccgtatgtatcttaaggaaataggtaag
gtacctcttctctcagcagatgaggagattgagctcgctcagaatatggaggacggagcg
gtagcaaccgagaagattaatgtactaaagggccgcattgatggtgcatcggaagaggaa
aaggctgagataaaggaagaaataaagacactgcagagggatgtggacaagggagcagat
gccaaaaagcgtcttgcagaagcaaacctgcgtcttgttgtcagcatcgcaaagagatat
gtgggaagaggaatgcttttccttgacctgattcaggagggaaacttaggtcttatcaag
gcagttgagaagttcgactacaagaagggctacaaattctctacatatgccacatggtgg
attcgccaggctatcacaagagccatagctgatcaggccagaacaatccgtattcctgtg
catatggttgagacaatcaacaagctcatccgtgtgtcaagacagctccttcaggagctt
ggcagagagccttcaccggaggaaattgccaaggagatgaacatgccggtagagcgtgtg
cgtgagatactcaagatatcgcaggagcctgtttcacttgagactccaatcggtgaggag
gaggattcacatcttggtgatttcatcaaggatgataatgtaccggttcctgctgatgcg
gcagcattcacacttcttaaggagcagcttgaggaggtgcttggcactcttacagagaga
gagcagaaggtactcacactccgctttggcttagaggacggcagagccagaacacttgaa
gaagtaggtaaggagttcaacgtcactcgtgagcgtatccgccagattgaggcaaaggcg
ctaagaaagcttcgtcatccaagcagaagtagaaagcttaaggactacttagagtaa
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