Agathobacter rectalis M104/1: ERE_14210
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Entry
ERE_14210 CDS
T02588
Name
(GenBank) Superfamily II DNA and RNA helicases
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
era
Agathobacter rectalis M104/1
Pathway
era03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
era00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ERE_14210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
era03019
]
ERE_14210
03009 Ribosome biogenesis [BR:
era03009
]
ERE_14210
Enzymes [BR:
era01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ERE_14210
Messenger RNA biogenesis [BR:
era03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ERE_14210
Ribosome biogenesis [BR:
era03009
]
Prokaryotic type
rRNA helicases
ERE_14210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
AAA_19
Helicase_RecD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CBK93406
LinkDB
All DBs
Position
complement(1458935..1460527)
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AA seq
530 aa
AA seq
DB search
METIRFDELELNPKILRGIKDMGFEEATPIQAQGIPAVLSGRDVIGQAQTGTGKTAAFGI
PVLESVDASSHKTQVIILSPTRELAIQVADEIRKLAKYMHGVKVLPVYGGQDISRQIKAL
KGGVQIIIGTPGRLMDHLRRKTIRPDHVKTIVLDEADEMLNMGFREDIETVLEYLPQEHQ
TVLFSATMPKPILEITRKYQHDAINIKIVKKELTVANIDQYYYDVKRKDKIDVLTRLLDY
YNPKLSLVFCNTKKMVDELAYELCGRGYSAEGLHGDMKQVQRDRVMKNFRNGKTDILIAT
DVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRCGKAFSFVKGKEVYKLKDIQR
YCKTKIYAQPIPSSDDVAKIRAEKIMDQISTIIDEENLTSVIDIIENQINESDYTAMDIA
AAFLYQAMGASEISTAESKDDYDFHNTGAEDGMVRLFINVGKKDKIKPGDILGAIAGESG
MPGRLVGAIDMYDKYTFVEVPAEYGKEVLNAMKNAKIKGRSVNMEPANSR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaatcagatttgacgaattagaactaaaccctaagattttgcgaggcatcaag
gatatgggctttgaggaggcaactccaatacaggctcagggaatcccggcagtgctttcg
ggcagggatgtaatcggacaggcacagaccggaacaggaaagacagcagcctttggtatt
ccggtgcttgagagcgttgatgcatcaagtcacaagacacaggttatcatcctctctcct
acaagggagcttgccatccaggtggcagatgaaatcaggaagcttgcaaaatatatgcat
ggtgtgaaggtacttccggtatacggaggacaggatatcagccgccagattaaggcactt
aagggcggtgtgcagattattatcggaaccccggggcgtcttatggatcatctcaggaga
aagacaatcaggcctgaccatgtaaagacaatagtgctcgacgaggcagacgagatgctc
aacatgggctttagggaggacatcgagacagtgctcgaatacctgccacaggagcatcag
acagtactcttctcggcaacaatgccaaagcctattttggaaattacaagaaaatatcag
catgatgctatcaatatcaagattgtgaaaaaagagctgacagtcgcaaatatcgaccag
tattactatgatgtgaagcgcaaggacaagatagatgtactcacaagactgttggattac
tataatccaaagctctcacttgtattctgcaataccaagaagatggtcgacgagctggca
tatgagctttgcggacgcggctacagtgcagaaggacttcatggcgatatgaagcaggtg
cagagagatcgtgtcatgaagaacttcagaaacggaaagacagatattcttattgccact
gatgtcgcagcgcgtggaattgatgtggatgatgtggaggctgttttcaattatgatctg
cctcaggatgacgagtattatgtacatagaatcggtcgtacaggaagagcaggccgctgt
ggaaaggcattctcctttgtaaagggcaaggaggtatataagctcaaggacatacagcgc
tactgcaagacaaaaatctatgcacagccaattccatcatctgatgatgttgccaaaatc
agggcagaaaagattatggaccagatttccaccattatagatgaggaaaatctcacaagt
gtcattgatattatagagaatcagataaatgagtcagattacacggcaatggatatagcg
gcggcatttttataccaggctatgggtgcttcagagatatccacagctgaatcaaaggac
gactatgatttccacaatacaggagctgaggatggcatggtacgcctgtttatcaacgtc
ggaaagaaggacaagataaagccgggtgacattttaggcgccattgcaggcgagtcaggc
atgcccggcaggcttgtcggtgcaatcgacatgtacgataagtatacatttgttgaggta
ccggctgagtatggcaaggaagtgcttaatgccatgaagaatgcaaagataaagggccgc
tctgtgaacatggagcctgcaaattcacgttag
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