Agathobacter rectalis M104/1: ERE_15470
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Entry
ERE_15470 CDS
T02588
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
era
Agathobacter rectalis M104/1
Pathway
era03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
era00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ERE_15470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
era03019
]
ERE_15470
03016 Transfer RNA biogenesis [BR:
era03016
]
ERE_15470
Enzymes [BR:
era01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ERE_15470
Messenger RNA biogenesis [BR:
era03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ERE_15470
Transfer RNA biogenesis [BR:
era03016
]
Prokaryotic type
tRNA degradation factors
ERE_15470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_HELZ2
OB_Dis3
S1_RRP5
AlkZ-rel
Motif
Other DBs
NCBI-ProteinID:
CBK93504
LinkDB
All DBs
Position
complement(1579123..1581249)
Genome browser
AA seq
708 aa
AA seq
DB search
MSNIDKYETRKKMVYDFMCDDMYVPMKIKELCIVLGVKKEDRPQLEQILLDLQAEGRITL
SKRGKYSKSEIKKTVGVFTAHQRGFGFVTVEGEPDDIFIPAEYVNGAMHMDTVEITISPV
TTGRRKEGKVVSVIERGMKQVVCTYEASDNFGFAVPDNTRFGTDIFIPKERSKGAMSGHK
VVVEITSYGKKGKKPEGKVVEIIGHIDDPGTDILSIVKAYDLPVDFSEKIMHQVQNVAKD
VTPADMAGRMDLRDWMMVTIDGEDAKDLDDAVSLYMDGDNYVLGVHIADVSNYVQEHSAL
DVEALKRGTSVYLVDRVIPMLPRELSNGICSLNEGCDRLALSCIMTINKKGEVIDHKIAE
TVIKTNRRMTYTNVKKILADKDAAVIEEYKELVPMFEKMAELAAILRKKRMKRGSIDFDF
PETKVVLDEDGHPIEIKPYDRNVATKLIEDFMLIANETVAEDYFWQEIPFVYRTHDKPDS
EKIAKLSTFINNFGYTLHIGADEVHPKELQKLLMKVDGTDEESLISRLTLRSMKQARYTT
ACTGHFGLAANYYCHFTSPIRRYPDLQIHRIIKENIRGRMNDNRREHYESILDAVAKQAS
ETERRAEEAERETVKLKKCEYMSNHIGECFEGVISGVTEWGFFVELPNTVEGLVRVTDLT
DDFYEFYEDTYELAGSATNKRYKLGQKIKVVVDSTDKIMRTIDFKPAE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatatagataaatatgaaacacgaaaaaagatggtctatgacttcatgtgtgat
gacatgtatgttccgatgaaaatcaaggaactttgcatagtactaggagtaaaaaaagag
gacagacctcagcttgaacagattcttttggatttgcaggcagagggaaggataacactc
tcaaagcgcgggaaatattcaaagtcggaaatcaaaaagacagtcggcgtattcacagcg
catcaaaggggatttggctttgtcactgtggagggagagcctgatgatatttttatcccg
gcagagtatgtaaatggtgcgatgcacatggacactgttgagattacaatctcacctgtc
acaacaggacgccgcaaggagggaaaggttgtttccgtcatagagcgaggcatgaagcag
gtagtctgcacctatgaggcaagtgataattttggttttgcagtgcctgacaataccaga
tttggcacagatattttcataccaaaggagcgctcaaagggtgctatgtcgggccataag
gtagtggttgaaatcacaagctatggtaaaaagggcaaaaagccggagggcaaggttgtt
gaaataatcggacatatagatgacccgggtacagatattctttctatagtaaaggcttat
gatctgcctgtggatttttcagagaaaatcatgcatcaggtgcagaatgtggcaaaggat
gtgacacctgcggatatggccggcaggatggatttacgcgactggatgatggtcacgata
gacggagaagatgcaaaggatcttgatgatgccgtgtctttatacatggatggcgacaat
tatgtacttggagtacacatagcagatgtgtcgaattatgtgcaggagcacagtgccctt
gatgtggaggcacttaagagaggaacatcggtttatcttgtagacagagtaattccgatg
cttccaagagagctttcaaatggcatatgctccttgaatgaaggatgtgacaggctggct
ctttcatgcattatgacaataaataaaaagggtgaagtcatcgatcataaaattgcagag
acagtcataaagacaaaccgcaggatgacatacacaaatgtaaaaaagattcttgcagat
aaggatgccgctgtgattgaagaatataaggagcttgtgcctatgtttgaaaaaatggca
gagcttgcagcaattctacgcaaaaagagaatgaaacgaggttctatagactttgatttt
ccggagactaaagtcgtgctcgatgaagatggtcatccgatagaaataaagccgtatgac
agaaatgtggcaacaaagctcattgaggattttatgcttatagcaaatgaaactgtggct
gaggattatttctggcaggaaataccttttgtatacagaacacatgacaagccggactca
gaaaaaatcgcaaagctttccacatttatcaataattttggctatacgcttcatattgga
gctgatgaggtacacccaaaggagcttcagaagcttttgatgaaggtggatggcacagat
gaagaatccctgataagcagactgacactgcgctctatgaaacaggcacgatatacaaca
gcatgtacaggacattttggactggcggcaaattattattgtcactttacatcaccaatc
cgcagatatcctgatttgcagatacaccgtatcatcaaggaaaatatccgcggcaggatg
aatgataaccgaagggagcactatgagtctatactcgatgctgttgcaaagcaggcaagt
gagaccgaacgacgtgcagaagaggcagagcgtgaaacagtcaagcttaaaaaatgtgaa
tacatgtcaaatcatattggtgaatgctttgaaggagttatatcaggtgtcacggagtgg
ggctttttcgtggagcttccaaatacagttgagggacttgtgcgcgtgacagacctgaca
gacgatttctatgagttttacgaggatacctatgagctagccggttcagccaccaataag
agatacaagcttggacaaaaaatcaaggttgttgtggacagtactgacaaaattatgcgt
acaattgattttaaaccggctgaataa
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