Agathobacter rectalis M104/1: ERE_16010
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Entry
ERE_16010 CDS
T02588
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
era
Agathobacter rectalis M104/1
Pathway
era03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
era00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ERE_16010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
era03021
]
ERE_16010
03019 Messenger RNA biogenesis [BR:
era03019
]
ERE_16010
Transcription machinery [BR:
era03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ERE_16010
Messenger RNA biogenesis [BR:
era03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ERE_16010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
OB_RNB
Rho_N
S1CSD-TOTE-2
AAA_14
AAA_22
AAA_24
AAA_25
Spore_III_AA
Mor
Motif
Other DBs
NCBI-ProteinID:
CBK93556
LinkDB
All DBs
Position
complement(1635429..1636769)
Genome browser
AA seq
446 aa
AA seq
DB search
MEQMREKYESLSAFVLKDLAKARGIKGVSSLKKGQIIERMLEEDAKEAEEAEKNGTAEER
ANSFKDDYAALDSGEEAEGILEVMPEGFGFIRCDNYMPGDHDIYVAPAQIRRFNLKTGDI
VKGNMKVKSEREKFQALLYLTTVNGYTPDVAQKRTSFEDLVPIFPNERLRLERPGASVAM
RVVDLISPIGKGQRGMIVSQPKAGKTTLLKEVAKSVTINNPEMHLIILLIDERPEEVTDI
KEAIEGDNVEVIYSTFDELPEHHKRVSEMVIERAKRLVEHGNDVMILLDSITRLARAYNV
TVPPSGRTLSGGLDPVALHMPKRFFGAARNMRNGGSLTILATALVDTGSKMDDVVFEEFK
GTGNMELVLDRKLSEKRIFPAIDIVKSGTRREDLLLDEDEQAAVDNMRKAFNGMRSDEAV
ENVLNMFAHTKSNKEFVNLVKKNRIL
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggaacagatgagagaaaaatatgaaagtttgtcggcatttgtgcttaaggatctggcg
aaggcaagaggaattaagggcgtttcatcactgaaaaagggacagattattgaaagaatg
ctcgaggaggatgcaaaagaggctgaggaggctgagaaaaacggtacagccgaggagcgc
gccaactcttttaaagatgattatgcagcactcgacagtggagaagaggcagaaggcata
cttgaggtaatgccggagggctttggatttatccgctgtgataattatatgccgggagat
catgatatctatgtggcacctgcgcagatacgccgcttcaatttaaagacaggtgatatc
gtaaagggtaatatgaaggtgaagtctgagcgtgagaaattccaggctcttttatacctg
accactgtcaacggatatacaccggatgtagcacagaagcgtacaagctttgaggatctt
gtgcctatattcccgaatgagagactgcgtctcgagagacccggagcaagtgttgcgatg
agggttgtagatctcatctctccaataggaaagggacagcgaggcatgatcgtttcacag
cctaaggccggaaagaccacattacttaaagaggttgcaaagtctgtcactataaacaat
cctgagatgcatcttattattctccttattgatgagagaccggaggaggttacagatatc
aaggaggctatagagggggacaatgtcgaggtaatctactctacatttgatgaacttcct
gagcatcacaagagagtgtcagagatggtaatagagagagcaaagcgccttgtagagcat
ggtaatgatgtcatgatactccttgacagcataacaaggcttgcaagagcttacaatgtg
acagttccaccatcaggccgtacactttcaggaggacttgatcctgtagcgcttcatatg
ccaaagagatttttcggagcagcacgtaatatgagaaacggcggcagtctgacaatactt
gcaacagcccttgttgatactggaagcaagatggatgatgtagtatttgaggagttcaag
ggaacaggaaacatggagcttgtgctcgacagaaagctttccgagaagagaatcttccct
gctatagatatagtaaaatcaggaacaaggcgtgaggatctgctccttgatgaggatgag
caggcagcagtcgataatatgcgtaaagccttcaacggcatgcgctctgatgaggctgtt
gagaacgtactcaacatgtttgcacacacaaagagcaacaaggaatttgttaatcttgta
aagaaaaacagaattttataa
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