Agathobacter rectalis M104/1: ERE_25680
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Entry
ERE_25680 CDS
T02588
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
era
Agathobacter rectalis M104/1
Pathway
era03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
era00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ERE_25680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
era03021
]
ERE_25680
03400 DNA repair and recombination proteins [BR:
era03400
]
ERE_25680
Enzymes [BR:
era01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ERE_25680
Transcription machinery [BR:
era03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ERE_25680
DNA repair and recombination proteins [BR:
era03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ERE_25680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Tudor_krimper_1st
Motif
Other DBs
NCBI-ProteinID:
CBK94414
LinkDB
All DBs
Position
complement(2633410..2637258)
Genome browser
AA seq
1282 aa
AA seq
DB search
MPETNNIENNQAMQFDAIQIGLASPEKIREWSHGEVKKPETINYRTLKPEKDGLFCEKIF
GPTKDWECHCGKYKKIRYKGVVCDRCGVEITKSSVRRERMGHIELAAPVSHIWYFKGIPS
RMGLILDLSPRVLERVLYFASYIVLDPGETKLAYKQILNESEYQEACDTYGRSAFRVGMG
AESIRELLAAIDLEKDSAELKAELENATGQKRARIIKRLEVVEAFRESGNKPEWMIMTVI
PVIPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLRRLLDLGAPDIIVRNEKRMLQEA
VDALIDNGRRGRPVTGPGNRALKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVICVEPKLK
IYQCGLPKEMAIELFKPFVMKELAANGTAHNIKSAKKMVERLQPEVWDVLEDVIKEHPVM
LNRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLTAEAQAECRF
MLLSPNNLLKPSDGGLVAVPSQDMILGVYYLTMRKLADYKDDPKMVAQVSSDTVYNDIEE
LRKLTTPDENTGKAELGLYDLIWFEDVTDGNRRVLCRPIDLLGRYYGSVNLAMLAYENKE
ITLHQNIFVHRTVKLPDGTEVSGFTETTVGLLIFNENIPQDLGFIDRSKAENALKFEVEF
HVGKKQIKQILEKVINTHGATTTAEVLDNVKAMGYKYSTQAAMTVSISDMTVPPQKPQMI
ADAQDTVDKITRQYKRGLITDEERYKEVIETWKDTDDALTKALLTGLDKYNNIFMMADSG
ARGSDKQIKQLAGMRGLMADTTGRTIELPIKSCFREGLDVLEYFMSAHGARKGLSDTALR
TADSGYLTRRLVDVSQHMIVRETDCCAGTGREIPGMVVKAFMEGREEIESLQERITGRFS
CNTICDKDGNVIVKANHMITPKRAAKVMAEGVDENGNPITQVKIRTVLTCRSHMGVCAKC
YGSNLATGQAVQVGEAIGIIAAQSIGEPGTQLTMRTFHTGGVAGGDITQGLPRVEEIFEA
RKPKGLAIITEFGGTATIKDTKKKREVIVTNNETGETKAYLIPYGSRIKVVDGQELEAGD
ELTEGSVNPHDILKIKGVRAVQDYMLREVQRVYRLQGVEINDKHVEVIVRQCLQKIRVEE
PGDSDLLPGSMVDALDFLELNEKLEEEGKELAVGSQVLLGITKASLATNSFLSAASFQET
TKVLTEAAIKGKVDPLIGMKENVIIGKLIPAGTGMKIYRNIKLDSDVNDDDTLDFDDDDF
ADFAEEEAVGVIDTDAESVDEE
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaacaaataatatagaaaataatcaggcaatgcagtttgatgcgattcagatt
ggattagcatctcctgaaaagatcagagagtggtcacatggcgaggttaaaaagcctgag
actattaactatagaacattaaagcctgaaaaagacggtcttttctgcgagaagattttc
ggaccaacgaaggactgggagtgtcattgtggtaaatacaagaagatacgttataagggt
gttgtctgcgaccgatgcggcgtagaaatcacaaagtcaagcgttcgtagagagcgtatg
ggacacatcgagcttgctgctcctgtatctcatatctggtatttcaagggtatcccatca
cgtatgggactcatccttgacttatctccacgtgtacttgagagagtactgtactttgct
tcatatattgtgcttgacccgggcgagacaaagcttgcatacaagcagattctcaacgag
tcagagtaccaggaggcatgcgatacttatggccgctcagcattccgtgtaggaatgggt
gctgagtctatccgtgagcttttagcagcaatcgatctcgagaaggattcggcagagctt
aaggcagagcttgagaatgctacaggccagaagcgtgcacgtatcatcaagagacttgag
gttgtagaggctttccgtgagtcaggaaacaagcctgagtggatgattatgacagttatt
cctgttatcccgccggatcttcgtccaatggttcagctcgatggaggacgtttcgcaaca
agtgatcttaacgacctttacagacgaatcatcaaccgtaacaaccgtcttagaagactt
cttgatcttggagcaccggatatcatcgttcgtaacgagaaacgtatgcttcaggaggct
gtcgatgcacttatcgacaacggccgtcgtggacgtcctgttaccggtccaggaaacaga
gctcttaagtctctttcagacatgctcaagggaaagggaggacgtttccgtcagaacctt
ctcggaaagcgagttgactactcaggacgttcagttatctgtgtagagccaaagcttaag
atttatcagtgtggtcttccaaaggagatggcaatcgagcttttcaagccattcgttatg
aaagaacttgccgctaacggaaccgcacacaatataaagagtgcaaagaagatggttgag
agacttcagccggaggtatgggatgtccttgaggacgtcatcaaagagcatccggttatg
cttaaccgagctcctacactccacagacttggaatacaggccttcgagccaatccttgta
gagggtaaggcaatcaagcttcatccactcgtatgtacagcgttcaacgccgacttcgat
ggagaccagatggctgtacatcttccattgactgctgaggcacaggctgagtgcagattc
atgcttctgtcacctaacaacctgcttaagccttctgatggtggacttgtagccgttcct
tcgcaggatatgatccttggagtttattacctcacaatgagaaagctcgctgattacaag
gatgatccaaagatggttgcacaggtgtcatcagacactgtatacaatgatattgaggag
cttagaaagcttacaactcctgatgaaaatacaggaaaggctgagcttggcttatatgac
ctcatctggtttgaggatgttacagacggaaaccgtcgtgtgctttgcagaccgatagat
cttctcggccgttactatggaagtgttaatcttgcaatgctcgcttacgagaacaaggag
attactcttcaccagaatatctttgtacaccgtacagtaaagcttcctgacggcacagag
gtttcaggttttacagagacaacagtaggacttttgatattcaatgagaacattccacag
gatcttggttttatagacagatcaaaggctgagaatgcactcaagtttgaggttgagttc
cacgttggtaagaaacagatcaagcagatccttgagaaggttatcaacacacacggagct
acaacaacagcagaggttcttgataatgtcaaggctatgggatacaagtattcaacccag
gctgccatgacagtttcaatttcagatatgacagtgccaccacagaagccacagatgatc
gctgatgcacaggacactgtagataagattacaagacagtacaagcgtggacttatcact
gatgaggagcgttacaaagaggttatcgagacatggaaggatacagatgatgcccttaca
aaggcacttcttacaggtcttgataagtacaacaacatcttcatgatggcagattccgga
gcccgtggatctgataagcagatcaaacagcttgcaggtatgcgaggactcatggctgat
acaacaggtcgtacaatcgagcttcctatcaagtcatgcttccgtgagggtcttgacgta
ctcgagtacttcatgtcagcacatggagctcgtaagggactttcagatacagcgcttcgt
acagccgattcaggataccttacaagacgtctcgtagatgtttcacagcatatgatcgtt
cgtgagacagactgctgtgcaggcacaggacgtgagattccgggaatggttgtaaaggca
ttcatggagggtcgagaggaaatcgagagccttcaggagagaattacaggtcgtttctct
tgcaatacaatctgcgataaggatggcaatgtaatcgttaaggccaaccatatgattaca
ccaaagcgtgcagcaaaggttatggcagagggtgttgacgagaatggtaatccaatcaca
caggttaagatccgtacagtgcttacctgccgttcacacatgggagtatgtgctaagtgt
tacggttcaaaccttgcaacaggtcaggcagtacaggttggtgaagcaatcggtatcatc
gcagcacagtcaatcggtgagcctggtacacagcttaccatgagaaccttccatacaggt
ggtgttgccggtggagatatcacacagggtcttcctcgagtagaggagattttcgaggca
cgtaagcctaagggactcgctattatcacagagttcggcggaactgccacaatcaaggat
acaaagaagaagcgtgaggttatcgttacaaacaacgagacaggcgagacaaaggcttac
ctcattccttacggctcacgtatcaaggttgtagacggacaggagcttgaggccggcgac
gagcttacagagggttctgtaaatccacacgatatcctcaagattaagggcgttcgtgcg
gttcaggattatatgctccgcgaggtacagcgtgtttaccgtttacagggtgttgagatt
aacgataagcatgtcgaggttatagttcgtcagtgcttacagaagatccgcgtagaggag
ccgggagattcagatttacttccgggcagcatggttgatgcccttgacttcttagagctc
aacgagaagcttgaggaagagggtaaggagcttgcagttggctcacaggtattacttgga
atcacaaaggcatctcttgcaaccaactcattcctgtcagcagcttcattccaggagacc
acaaaggttcttactgaggcagcaatcaagggcaaggttgatccgcttatcggtatgaag
gagaacgtaatcatcggtaagctcatcccggcaggaacaggtatgaagatttatcgtaat
atcaagcttgacagcgatgtaaacgatgacgatacacttgattttgatgatgatgatttt
gcggatttcgcagaggaagaggcagtcggagtcattgatacagatgctgaatcagttgat
gaagaataa
DBGET
integrated database retrieval system
