Enterococcus raffinosus: J9537_01610
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Entry
J9537_01610 CDS
T07517
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eraf
Enterococcus raffinosus
Pathway
eraf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eraf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J9537_01610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eraf03019
]
J9537_01610
03009 Ribosome biogenesis [BR:
eraf03009
]
J9537_01610
Enzymes [BR:
eraf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J9537_01610
Messenger RNA biogenesis [BR:
eraf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J9537_01610
Ribosome biogenesis [BR:
eraf03009
]
Prokaryotic type
rRNA helicases
J9537_01610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
FlaC_arch
CMS1
Motif
Other DBs
NCBI-ProteinID:
QXJ59514
LinkDB
All DBs
Position
295109..296653
Genome browser
AA seq
514 aa
AA seq
DB search
MKFKELKLSPELLVAIERSGFEEATPIQEQTIPLALDGKDVIGQAQTGTGKTAAFGLPML
DKIDTTKNVLQGLVISPTRELAIQTQEELYRLGRDKKIRVQAVYGGADIGRQIRGLKDRP
HIVVGTPGRMLDHINRHTLKLETVETLVLDEADEMLNMGFLEDIEKIISKVPAERQTLLF
SATMPDAIKKIGVKFMKDPEHVKIKAKEMTADLIDQYYVRAKDYEKFDIMTRLFDVQTPD
LAIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKRGDLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVIENLTKK
RMNPMRPPTEKEAFKGQLGAAMEQIQSQMEENSDSLEKYNESAQELLAAYSPEELTAMLL
KTVAKDPADSVPVKITPERPLPSNKKGGFNRGGKRGGGNNRGGGRGKDNYRKDRDRNNNK
NKNYGGNKQRSNNKNSNRSNDKKRGFVIRTNTND
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattcaaagaactaaaattatcaccagaactattagtagcgatcgaacgctcaggt
tttgaagaagcaacaccgattcaagaacaaactattcctttagcactagacggaaaagat
gttattggtcaagcacagacagggactggtaaaacagccgcttttggtctaccgatgtta
gacaaaattgatacgacgaagaatgttttacaaggtctagtaatttcaccaacccgtgaa
cttgctatccaaacacaagaagaattgtatcgtttaggccgcgataaaaaaattcgtgta
caagctgtctatggcggtgcagacattggtcgtcagattcgtggattgaaggatcgtcca
catatcgtcgttggaacaccaggacggatgttggatcatatcaatcgtcacaccctaaaa
ttagaaacagtcgaaacgcttgttctagacgaagcagacgaaatgttgaacatgggcttc
ctagaagatatcgaaaaaattatcagtaaagtccctgcagaacgccaaacattgttgttc
tcagcaacaatgcctgatgcaatcaaaaaaatcggcgtgaaatttatgaaagaccctgaa
cacgtgaaaatcaaagcgaaagaaatgaccgctgatttaatcgatcaatattatgttcgg
gcgaaagattatgaaaaattcgatattatgactcgtttgtttgatgttcaaacaccagat
ttagcgattgtctttggacgtactaaacgtcgcgttgatgaattagcacgtggcttggag
gcgcgcggctacaaagcagaaggaattcatggcgatttgtcacaacaaaaacgaatgagt
gtcttgcgctcatttaaacgtggcgatcttgatatcttagtcgcaacagatgttgctgct
cgcggattggatatctcaggtgttactcatgtgtataactatgatattccacaagatcca
gaaagctatgttcaccgcatcggtcgtacaggtcgtgctggtaaaggtggtatgtctgta
actttcgttacaccaaacgaaatgggttacttgcatgtcattgaaaacttaacgaaaaaa
cgtatgaacccaatgcgtccgccaaccgagaaagaagccttcaagggtcaactaggagcg
gcgatggaacaaattcaaagccaaatggaagaaaattctgatagcttagaaaaatacaat
gaatcagcacaggagttattagcagcttattctccagaagaattaactgcaatgctgttg
aagacggtcgctaaggacccagctgactctgtacctgttaaaattacaccagaacgtcca
ttgccttcaaataaaaaaggcggctttaatcgtggcggtaaacgcggcggaggaaacaac
cgtggcggcggacgcggaaaagataactaccgcaaagatcgcgaccgtaacaataacaag
aacaaaaactacggcggaaacaaacaacgcagcaacaataaaaattcaaaccgtagtaac
gacaaaaagcgcgggtttgtaattcgcactaacacaaacgattaa
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